| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3703 |
|---|
| Symbol | |
|---|
| ID | 8134683 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4178928 |
|---|
| End bp | 4180922 |
|---|
| Gene Length | 1995 bp |
|---|
| Protein Length | 664 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644867003 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_003019254 |
|---|
| Protein GI | 253690064 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.94599 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCTC GTAAAGAACT TGCCAATGCT ATCCGCGCGC TGAGCATGGA TGGGGTGCAG
AAAGCCAAAT CCGGTCACCC GGGCGCACCG ATGGGCATGG CCGATATCGC CGAAGTCCTG
TGGCGCGATT ACCTCAACCA TAATCCGGCC AACCCCAACT GGGCCAACCG CGACCGCTTC
GTGCTGTCCA ACGGCCACGC GTCCATGCTG ATTTACAGCC TGCTGCATCT CTCCGGCTAC
GACCTGCCGA TTGAAGAACT GAAAAACTTC CGCCAGTTGC ATTCCAAAAC CCCGGGTCAC
CCGGAATACG GCTACACCGC CGGCGTCGAA ACCACCACCG GCCCGCTGGG GCAGGGTATC
GCTAACGCGG TCGGGATGGC GATTGCCGAG CGCACGCTGG CTGCGCAGTT CAACCGTCCG
GGTCACGAGA TTGTCGACCA CCACACCTAC GCCTTCCTCG GCGACGGCTG CATGATGGAA
GGGATTTCCC ACGAAGTCTG CTCGCTGGCC GGCACCATGA AGCTCGGCAA GCTGACCGCG
TTTTATGATG ACAACGGCAT CTCCATCGAC GGCCACGTTG AAGGCTGGTT TACCGACGAT
ACTGCCGCCC GTTTTGAAGC CTACGGCTGG CACGTGGTGC GCGGCGTAGA CGGTCACGAT
GCTGACGCTA TCAAATGCGC CATCGGTGAA GCTCAACTGG TGACCGACAA GCCGTCGCTG
CTGATGTGCA AAACCGTGAT TGGTTTCGGC TCACCGAACA AGGCCGGTAC GCACGATTCG
CACGGTGCGC CGCTGGGGGA TGCAGAAGTG GCGGCCTCCC GCGAACAGCT GGGCTGGACC
CACGCGCCGT TTGAGATTCC GGCGGATATT TATGCCGCCT GGGATGCGAA ACCGGCCGGT
CAGCGTAAGG AAGCGGCCTG GAACGAGGCG TTTGCTGCCT ACGCCAGCGC ATACCCGGAA
CTGGCTGCCG AGTTCACACG CCGCACCGGC GGTGAACTGC CGGCCAGCTG GCAGGCGGAC
GCGCAGAAAT TTATCGAAGA CCTGCAGGCC AATCCGGCGA AAATCGCCAG CCGCAAAGCC
TCACAGAACG CGCTGGAAGC CTACGGCAAA CTGCTGCCGG AATTCCTGGG CGGCTCGGCC
GACCTGGCAC CGAGCAACCT GACCATCTGG TCCGGCTCGG TATCGCTGGA TAAAGACCAC
GCGGGTAACT ACATCCACTA CGGCGTGCGC GAATTCGGCA TGACGGCGAT TGCCAACGGG
ATTGCGCTGC ACGGTGGCTT TGTGCCGTAC ACCGCGACCT TCCTGATGTT CGTGGAATAT
GCCCGTAACG CGGTGCGTAT GGCCGCGCTG ATGAAAATCC GCAGCATCTA CGTCTACACC
CACGACTCCA TCGGTCTGGG CGAAGACGGC CCGACGCACC AGCCGGTTGA ACAGCTGGCC
AGCCTGCGCG TGACGCCGAA CATGAGCAAC TGGCGTCCGG CGGACCAGGT GGAAACGGCG
GTGGCGTGGA AATACGCCAT TGAGCGTCAG GACGGTCCGA CGTCACTCAT CCTGTCCCGT
CAGAATCTGG CGCAGCAACC ACGTACTGCT GAGCAGTTGG CGAACGTGGC GAAAGGTGGC
TACGTGCTGA AAGACAGCGA CGGCCAGCCG GAGCTTATCC TGATTGCCAC CGGCTCTGAA
GTCGAGCTGG CTGTCGGGGC GTATGACAAG CTGACTGCCG CCGGCCGCAA GGTGCGTGTG
GTGTCGATGC CGTCAACGGA TGCATTCGAC AAGCAGGATG CAGCCTACCG TGAAGCGGTG
CTGCCGAAGG CGGTATCGGC ACGCGTGGCG ATTGAAGCGG GTATCGCAGA CTACTGGTTC
AAGTATGTTG GCCTGAACGG CGCGATTGTC GGCATGACGA GCTTCGGCGA ATCGGCTCCG
GCGGAGCTGC TGTTTGAAGA GTTCGGCTTC ACCGTCGATA ACGTGGTGGA AAAAGCGAAG
GCGCTGCTTA AGTAA
|
|---|
| Protein sequence | MSSRKELANA IRALSMDGVQ KAKSGHPGAP MGMADIAEVL WRDYLNHNPA NPNWANRDRF
VLSNGHASML IYSLLHLSGY DLPIEELKNF RQLHSKTPGH PEYGYTAGVE TTTGPLGQGI
ANAVGMAIAE RTLAAQFNRP GHEIVDHHTY AFLGDGCMME GISHEVCSLA GTMKLGKLTA
FYDDNGISID GHVEGWFTDD TAARFEAYGW HVVRGVDGHD ADAIKCAIGE AQLVTDKPSL
LMCKTVIGFG SPNKAGTHDS HGAPLGDAEV AASREQLGWT HAPFEIPADI YAAWDAKPAG
QRKEAAWNEA FAAYASAYPE LAAEFTRRTG GELPASWQAD AQKFIEDLQA NPAKIASRKA
SQNALEAYGK LLPEFLGGSA DLAPSNLTIW SGSVSLDKDH AGNYIHYGVR EFGMTAIANG
IALHGGFVPY TATFLMFVEY ARNAVRMAAL MKIRSIYVYT HDSIGLGEDG PTHQPVEQLA
SLRVTPNMSN WRPADQVETA VAWKYAIERQ DGPTSLILSR QNLAQQPRTA EQLANVAKGG
YVLKDSDGQP ELILIATGSE VELAVGAYDK LTAAGRKVRV VSMPSTDAFD KQDAAYREAV
LPKAVSARVA IEAGIADYWF KYVGLNGAIV GMTSFGESAP AELLFEEFGF TVDNVVEKAK
ALLK
|
|---|
| |