| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3680 |
|---|
| Symbol | |
|---|
| ID | 8134660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4154058 |
|---|
| End bp | 4154966 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644866980 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_003019231 |
|---|
| Protein GI | 253690041 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAAC AATTGCAGGA TATGGCGCTG TTTGCGCTGG TGGCCGAGTG TGGCAGTTTT
ACACAGGCGG CGCGCAAAGC CGGGCTGGCA AAATCCAGCC TGAGCTTGCG CATTAGCCAG
CTTGAACAGC AGATTGGCCT GCGGCTGTTA AACCGAACGA CGCGCCAGCT CAATCTGACG
TTTGCGGGTG AGCGCTATCT GATTCACTGT CAGGAGATGC TACAAGCCAG TGAGCGTGCC
GATCTCGCTA TACAGCGTCT GCGCGATAAC CCCAGTGGGC GGTTACGCAT CACCAGCCCG
GCAGGATTAG GTTCCACGCT GCTGGCGCGG CTTACCGCTG AATTTCAGCA GCGTTTTCCT
GCGGTATCGC TGGATGTACT GATTTCAGAT GCGGTGATCG ATCTGGTACA GGAAGGGTTT
GATGTCGCTT TTCGTACCGG TAAACCGCAC GATTCTTCAC TGATTGGACG CCCGCTTGGG
CAGACTCCCC GTTATTTGCT GGCATCGCCT GACTATCTGG CGCGGCACCC GGCATTACTC
CATCCGCAGC AGCTTCAGCA GCACCGCTGT ATTGCGCATC ATGCCTGGAC GGAGTGGCTC
CTTCATCGCG GTTCAGAACT TTATCGCTGG TTACTGCCCG ATGCACATAT CACCGATAAC
CTGCTTTACG CTCGCGAGTG CGCTATTGCG GGAGCTGGCA TTACTCTATT GCCAGATTTT
CTCTGCCTGG ATGACGCGGT GTCCGGGAAA TTGGTCAGGG TTTTGTCGGA TTGGCAGGCG
GAAGCTAACG AGCTTTATCT GGTGTATCCC AGCCGCAAGC TGAATTCGCC CGCATTAGCG
TGTTTTATCG ACTTTGTTTT ACAACATAGT GCGTTGGATG ATTACTCAAC GTTTTTGAAA
AAGCAGTAG
|
|---|
| Protein sequence | MFKQLQDMAL FALVAECGSF TQAARKAGLA KSSLSLRISQ LEQQIGLRLL NRTTRQLNLT
FAGERYLIHC QEMLQASERA DLAIQRLRDN PSGRLRITSP AGLGSTLLAR LTAEFQQRFP
AVSLDVLISD AVIDLVQEGF DVAFRTGKPH DSSLIGRPLG QTPRYLLASP DYLARHPALL
HPQQLQQHRC IAHHAWTEWL LHRGSELYRW LLPDAHITDN LLYARECAIA GAGITLLPDF
LCLDDAVSGK LVRVLSDWQA EANELYLVYP SRKLNSPALA CFIDFVLQHS ALDDYSTFLK
KQ
|
|---|
| |