Gene PC1_3650 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3650 
SymbolispH 
ID8134630 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp4118550 
End bp4119500 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content51% 
IMG OID644866950 
Product4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
Protein accessionYP_003019201 
Protein GI253690011 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.42936 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGATCC TGCTGGCTAA TCCACGCGGC TTTTGTGCCG GTGTCGATCG TGCTATCAGC 
ATTGTGGAAC GTGCGCTGGA GCTTTTTGGT ACGCCGATCT ACGTCCGTCA TGAAGTGGTA
CATAACCGCT ATGTGGTTAA CGGATTACGC GAACGTGGTG CGATATTTAT TGAGCAGATT
GAAGACGTGC CGGACGGTGC GATTCTTATT TTCTCTGCGC ATGGCGTCTC GCAAGCGGTA
CGTAATGAAG CAAAAAGCCG TGACCTGACG GTATTCGATG CAACCTGCCC GCTGGTAACC
AAAGTACATA TGGAAGTGGC CAGAGCCAGT AAGAAAGGCA TAGAAGCGAT TCTTATCGGG
CATGCTGGAC ACCCTGAAGT TGAAGGGACG ATGGGGCAGT ACAGCAATGC GGATGGTGGC
ATGTATCTGG TGGAATCCCC CGAGGATGTC TGGCAGCTAC AGGTAAAAGA CGAAAGTAAC
CTGTGTTTTA TGACGCAAAC TACGCTTTCG GTTGATGACA CCTATGCAGT GATTGATGCG
CTGCGTGAGC GTTTCCCACA GATTGTTGGT CCGCGTAAAG ATGATATCTG CTATGCCACG
ACCAACCGTC AGGAAGCCGT TCGCCATTTG TCGGATAAGG CTGATGTCGT GTTTGTTGTG
GGTTCTAAAA ATTCCTCAAA CTCCAATCGC CTTGCTGAAT TGGCACAAAG AGCCGGGAAA
GCGGCTTACC TGATTGATTC AGCCGAAGAC ATCCAGGAGT CATGGGTCGA AGGCGCTTCG
CATGTTGGGG TAACCGCAGG CGCATCCGCA CCGGATATTC TGGTACAACA GGTGATTCAG
CGGCTGAAAG CATTAGGCGG CAAGGTTGCT GTTGAAATGC AGGGACGTGA AGAAAATATC
GTCTTTGAAG TGCCGAAAGA ACTGCGTGTT GAAGTCAAAC AGGTCGATTA G
 
Protein sequence
MQILLANPRG FCAGVDRAIS IVERALELFG TPIYVRHEVV HNRYVVNGLR ERGAIFIEQI 
EDVPDGAILI FSAHGVSQAV RNEAKSRDLT VFDATCPLVT KVHMEVARAS KKGIEAILIG
HAGHPEVEGT MGQYSNADGG MYLVESPEDV WQLQVKDESN LCFMTQTTLS VDDTYAVIDA
LRERFPQIVG PRKDDICYAT TNRQEAVRHL SDKADVVFVV GSKNSSNSNR LAELAQRAGK
AAYLIDSAED IQESWVEGAS HVGVTAGASA PDILVQQVIQ RLKALGGKVA VEMQGREENI
VFEVPKELRV EVKQVD