Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3650 |
Symbol | ispH |
ID | 8134630 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4118550 |
End bp | 4119500 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644866950 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_003019201 |
Protein GI | 253690011 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.42936 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGATCC TGCTGGCTAA TCCACGCGGC TTTTGTGCCG GTGTCGATCG TGCTATCAGC ATTGTGGAAC GTGCGCTGGA GCTTTTTGGT ACGCCGATCT ACGTCCGTCA TGAAGTGGTA CATAACCGCT ATGTGGTTAA CGGATTACGC GAACGTGGTG CGATATTTAT TGAGCAGATT GAAGACGTGC CGGACGGTGC GATTCTTATT TTCTCTGCGC ATGGCGTCTC GCAAGCGGTA CGTAATGAAG CAAAAAGCCG TGACCTGACG GTATTCGATG CAACCTGCCC GCTGGTAACC AAAGTACATA TGGAAGTGGC CAGAGCCAGT AAGAAAGGCA TAGAAGCGAT TCTTATCGGG CATGCTGGAC ACCCTGAAGT TGAAGGGACG ATGGGGCAGT ACAGCAATGC GGATGGTGGC ATGTATCTGG TGGAATCCCC CGAGGATGTC TGGCAGCTAC AGGTAAAAGA CGAAAGTAAC CTGTGTTTTA TGACGCAAAC TACGCTTTCG GTTGATGACA CCTATGCAGT GATTGATGCG CTGCGTGAGC GTTTCCCACA GATTGTTGGT CCGCGTAAAG ATGATATCTG CTATGCCACG ACCAACCGTC AGGAAGCCGT TCGCCATTTG TCGGATAAGG CTGATGTCGT GTTTGTTGTG GGTTCTAAAA ATTCCTCAAA CTCCAATCGC CTTGCTGAAT TGGCACAAAG AGCCGGGAAA GCGGCTTACC TGATTGATTC AGCCGAAGAC ATCCAGGAGT CATGGGTCGA AGGCGCTTCG CATGTTGGGG TAACCGCAGG CGCATCCGCA CCGGATATTC TGGTACAACA GGTGATTCAG CGGCTGAAAG CATTAGGCGG CAAGGTTGCT GTTGAAATGC AGGGACGTGA AGAAAATATC GTCTTTGAAG TGCCGAAAGA ACTGCGTGTT GAAGTCAAAC AGGTCGATTA G
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Protein sequence | MQILLANPRG FCAGVDRAIS IVERALELFG TPIYVRHEVV HNRYVVNGLR ERGAIFIEQI EDVPDGAILI FSAHGVSQAV RNEAKSRDLT VFDATCPLVT KVHMEVARAS KKGIEAILIG HAGHPEVEGT MGQYSNADGG MYLVESPEDV WQLQVKDESN LCFMTQTTLS VDDTYAVIDA LRERFPQIVG PRKDDICYAT TNRQEAVRHL SDKADVVFVV GSKNSSNSNR LAELAQRAGK AAYLIDSAED IQESWVEGAS HVGVTAGASA PDILVQQVIQ RLKALGGKVA VEMQGREENI VFEVPKELRV EVKQVD
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