Gene PC1_3619 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3619 
SymboltbpA 
ID8134599 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp4081909 
End bp4082925 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content54% 
IMG OID644866919 
Productthiamine transporter substrate binding subunit 
Protein accessionYP_003019170 
Protein GI253689980 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4143] ABC-type thiamine transport system, periplasmic component 
TIGRFAM ID[TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily
[TIGR01276] thiamine ABC transporter, periplasmic binding protein 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.454243 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTAAATC AATTACTACA GCGTTCAGCC ACCGTGCTGA AAATCAGCCT GCCTTGCCTG 
TTACTGCTCT CTGCTTCGGC GTTCGCCAAG CCTGCGCTAA CCGTTTATAC CTATGACTCA 
TTCGCTTCCG AATGGGGTCC GGGGCCTGTC ATCAAAACCG CCTTTGAGAA AGAGTGCGAG 
TGCGAACTGA ATTTCGTCGC GCTGGAAGAT GGTGCCTCAT TGCTGAACCG GCTGCGTATG 
GAAGGTAAAA ACAGCAAAGC GGACATCATT CTGGGACTGG ACAACAACCT GTTACAGGCC 
GCGGAACAAA CCGGCCTGTT TGCCCCGCAC AATCTGGATA CCAGCGCCGT TACGGTGCCG 
GGCGGCTGGA GCAATAAGAC TTTCGTCCCT TACGATTATG GCTATTTCGC CTTTGTGTAT 
AACAAAGACA CGCTGAAGAA TCCGCCGAAA AGCCTGCATG AGTTGGTGGA TAGCAACGCG 
CCGTGGAAAG TGATCTATCA GGATCCACGT ACCAGCACGC CGGGGCTGGG TTTGCTGCTG 
TGGATGCAGA AAGTGTACGG CGATGAGGCA CCGCAAGCCT GGCAGAAACT GGCGAAGAAA 
ACCGTTACCG TCACCAAAGG CTGGAGCGAA GCCTATGGCC TGTTCCTGAA AGGGGAAGCC 
GATCTGGTGC TGAGCTATAC CACGTCACCG GCCTACCACA TCATTGAAGA GAAGAAAGAC 
AACTACGCAG CCGCGACTTT CAGCGAAGGA CACTATCTGC AAATTGAAAT CGCCGGGCAG 
CTGGCTTCCA GCAAAAATCC CGAACTGGCA AAACGCTTTA TGCAGTTCAT CCTGAGCCCA 
ACCTTCCAGC AGGCGATCCC CACTACGAAC TGGATGTACC CAGCCGTTAA AACTGACCTG 
CCTGCGGGCT TCGCCACGCT CACGGTGCCG GAAAAAGCCA TGCAGTTCAG CGCACAAGAA 
GTCGCTGACC AAAGGACGCA GTGGATTCAG GCATGGCAAC GCGCCGTCAG CCACTAA
 
Protein sequence
MLNQLLQRSA TVLKISLPCL LLLSASAFAK PALTVYTYDS FASEWGPGPV IKTAFEKECE 
CELNFVALED GASLLNRLRM EGKNSKADII LGLDNNLLQA AEQTGLFAPH NLDTSAVTVP 
GGWSNKTFVP YDYGYFAFVY NKDTLKNPPK SLHELVDSNA PWKVIYQDPR TSTPGLGLLL 
WMQKVYGDEA PQAWQKLAKK TVTVTKGWSE AYGLFLKGEA DLVLSYTTSP AYHIIEEKKD 
NYAAATFSEG HYLQIEIAGQ LASSKNPELA KRFMQFILSP TFQQAIPTTN WMYPAVKTDL 
PAGFATLTVP EKAMQFSAQE VADQRTQWIQ AWQRAVSH