| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3590 |
|---|
| Symbol | ddl |
|---|
| ID | 8134570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4047251 |
|---|
| End bp | 4048171 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644866890 |
|---|
| Product | D-alanine--D-alanine ligase |
|---|
| Protein accession | YP_003019141 |
|---|
| Protein GI | 253689951 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.224564 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGA AAGTTGCTGT ATTGCTTGGT GGAACCTCTG CCGAACGTGA AGTGTCGTTA
CTTTCCGGTC AGGCGGTTTT GGCTGGTCTG AAAGAAGCGG GCATCAATGC GCACGCGGTT
GATACCCGTG ACGTCTCTGT GACGACGCTG AAGGAAGAAG GCTTTACCAA AATTTTTATC
GCCTTGCATG GTCGTGGTGG CGAAGATGGC ACATTGCAGG GCGTGCTGGA ATTCTTGGGG
TTGCCTTATA CCGGTAGCGG CGTCATGGCA TCTGCACTGA CGATGGATAA GCTCCGCACC
AAACAGGTGT GGCAAGCGGT GGGATTACCG GTATCACCTT ACGTGGCGCT GGATCGCCGC
CAGTATTCCG AGATGGCGGC AAACGCGTTG TTGGCGACGT TCACGCACCT CGGGTTGCCG
CTGATCGTCA AGCCAAGCCG TGAAGGTTCC AGCGTTGGTA TGAGCAAAGT GAATACGCTG
AGCGAACTGC CTGCGGCACT GGAAGAAGCA TTCCGTCATG ATGACGATAT TCTGGTCGAG
AAATGGCTGA GTGGCCCTGA GTATACGGTT GCTATTCTGG GTGATGAGGT GTTGCCTTCT
ATTCGTATTC AGCCTGCGGG TACGTTTTAC GATTATGAAG CGAAGTATTT ATCGGATGAT
ACGCAGTATT TCTGTCCGAG TGGTCTGTCG GACGAGAAAG AGCAGGAATT AGCGGGGCTG
GCTATGGCAG CCTATCGTGC GGTGGGATGC AGCGGGTGGG GACGCGTTGA TTTTATGCTG
GATAGCGACG GCGCCTTCTA TCTGCTCGAA GTAAATACGT CTCCGGGAAT GACGAGCCAC
AGTCTGGTTC CTATGGCAGC GCATCAGCGC GGCCTGACGT TCTCGCAGCT GGTCGTGAAA
ATTTTGGAGC TCGCTGGCTG A
|
|---|
| Protein sequence | MTEKVAVLLG GTSAEREVSL LSGQAVLAGL KEAGINAHAV DTRDVSVTTL KEEGFTKIFI
ALHGRGGEDG TLQGVLEFLG LPYTGSGVMA SALTMDKLRT KQVWQAVGLP VSPYVALDRR
QYSEMAANAL LATFTHLGLP LIVKPSREGS SVGMSKVNTL SELPAALEEA FRHDDDILVE
KWLSGPEYTV AILGDEVLPS IRIQPAGTFY DYEAKYLSDD TQYFCPSGLS DEKEQELAGL
AMAAYRAVGC SGWGRVDFML DSDGAFYLLE VNTSPGMTSH SLVPMAAHQR GLTFSQLVVK
ILELAG
|
|---|
| |