| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3586 |
|---|
| Symbol | lpxC |
|---|
| ID | 8134566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 4042873 |
|---|
| End bp | 4043805 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644866886 |
|---|
| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
|---|
| Protein accession | YP_003019137 |
|---|
| Protein GI | 253689947 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
|---|
| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000964902 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGATA AAATGATGAT CAAACAACGT ACACTAAAAC GTATTGTTCA GGCGACTGGT
GTCGGGTTAC ATACCGGCAA GAAGGTCACG TTGACCATGC GTCCTGCACC GGCAAATACC
GGGGTCATCT ATCGCCGCAC TGACTTGAAT CCCCCGGTTG ATTTCCCGGC TGATGCAAAA
TCCGTGCGTG ATACCATGCT CTGTACTTGC CTGGTTAATG AGCATGACGT GCGTATTTCT
ACGGTGGAGC ACCTTAACGC TGCGCTTGCA GGGTTGGGCA TTGACAATAT TGTCATTGAT
GTCGATGCAC CGGAAATTCC AATTATGGAT GGCAGCGCCA GCCCGTTTGT TTACCTGCTG
TTAGATGCGG GTATCGAAGA GTTGAATTGC GCCAAGAAAT TCGTGCGTAT CAAACAGCCA
GTTCGTGTTG AAGATGGCGA CAAGTGGGCC GAAATGAAAC CGTTTAACGG CTTCAGTCTG
GATTTCACTA TCGACTTCAA TCACCCGGCG ATTGATGCGG GCAACCAGCG CTATCGTTTG
GATTTCTCCG CTGATGCGTT TGTTCGCCAG ATCAGCCGTG CGCGTACATT CGGCTTCATG
CGCGATATCG AATACTTGCA GTCTCGTGGG TTGTGCCTGG GCGGCAGTAT GGATTGTGCC
ATCGTCGTTG ACGATTACCG CGTACTGAAC GAAGACGGTC TGCGTTTTGA AGATGAGTTT
GTCCGCCATA AAATGCTGGA TGCTATCGGT GACCTATTTA TGTGTGGTTA CAACATCATC
GGTGCGTTTT CTGCGTTTAA ATCCGGCCAT GCTCTGAACA ACAAACTGTT GCAGGCTGTG
TTGGCAAATC AGGAAGCGTG GGAATACGTG ACCTTTGAAG ACGAAGCTGA AATGCCGTTG
GCGTTTAAAG CACCGTCTAT CGTGCTGGCG TAA
|
|---|
| Protein sequence | MRDKMMIKQR TLKRIVQATG VGLHTGKKVT LTMRPAPANT GVIYRRTDLN PPVDFPADAK
SVRDTMLCTC LVNEHDVRIS TVEHLNAALA GLGIDNIVID VDAPEIPIMD GSASPFVYLL
LDAGIEELNC AKKFVRIKQP VRVEDGDKWA EMKPFNGFSL DFTIDFNHPA IDAGNQRYRL
DFSADAFVRQ ISRARTFGFM RDIEYLQSRG LCLGGSMDCA IVVDDYRVLN EDGLRFEDEF
VRHKMLDAIG DLFMCGYNII GAFSAFKSGH ALNNKLLQAV LANQEAWEYV TFEDEAEMPL
AFKAPSIVLA
|
|---|
| |