| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3575 |
|---|
| Symbol | |
|---|
| ID | 8134555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 4032145 |
|---|
| End bp | 4032591 |
|---|
| Gene Length | 447 bp |
|---|
| Protein Length | 148 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644866875 |
|---|
| Product | putative major pilin subunit |
|---|
| Protein accession | YP_003019126 |
|---|
| Protein GI | 253689936 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.270372 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACAC AACAAGGATT CACACTGATT GAACTGATGA TCGTCATTGC GATCGTCGCC
ATCCTCAGCG CCATTGGCGT TCCCGCCTAT CAGGGCTATC TGCAAAAAGC GGCATTGACG
GACATGCTGC AAACCATGGT GTCTTATAAA ACACCCGTCG ATCTCTGCGG GCTGGAAAAT
GCCGCGTTTA CCGCCTGTAG CGCAGGTAAT CAGGGGATTC CTGGCAGCAA ATCTTCACGC
TATGTCAGTG CCGTTAGCGT CGCCCAAGGA GTAATTACGC TGACCGGACA ATCCACTCTG
CAAGGGCTAC GCGTTATTCT GACGCCAACG TGGGATAGCG AAACCGGCGC CTCACGCTGG
ACAAAAAACT GTGCCACGGA TAATGGCGCA GAAAGCCTGC AAGCCGCCTG TCAGGACGTT
TTCCGTTTCG ATAACACGGC AGGTTAA
|
|---|
| Protein sequence | MTTQQGFTLI ELMIVIAIVA ILSAIGVPAY QGYLQKAALT DMLQTMVSYK TPVDLCGLEN
AAFTACSAGN QGIPGSKSSR YVSAVSVAQG VITLTGQSTL QGLRVILTPT WDSETGASRW
TKNCATDNGA ESLQAACQDV FRFDNTAG
|
|---|
| |