Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3570 |
Symbol | |
ID | 8134550 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 4026653 |
End bp | 4028011 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644866870 |
Product | amino acid permease-associated region |
Protein accession | YP_003019121 |
Protein GI | 253689931 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAATC AACAAACGGA CGGCACGCTA AAGCGTGGTT TGAAAAACCG TCATATTCAG TTGATTGCCT TGGGTGGCGC GGTAGGTACT GGCCTCTTTC TTGGTATTGC GCAAACGATC AAAATGGCCG GACCGTCGGT CCTGCTAGGC TATGCGATTG GCGGCCTGAT CGCATTTCTC ATTATGCGCC AGTTAGGCGA AATGGTGGTT GAAGAACCGG TAGCCGGATC GTTCAGCCAC TTTGCTTATA AATACTGGGG CGATTTCGCG GGCTTTGCAT CGGGATGGAA CTACTGGGTA CTGTATGTTC TTGTCGCCAT GGCCGAGCTC AGCGCCGTGG GGATTTACGT CCAGTACTGG TGGCCAGACA TCCCAACGTG GGTATCTGCT GCCGTATTCT TCCTGTTGAT TAACGCCATC AATCTGGCAA ACGTCAAAGT CTACGGTGAG ATGGAGTTCT GGTTTGCCAT CATCAAAGTC GCCGCGATTA TTGGCATGAT CGTCTTCGGC GGCTGGCTGC TGCTCAGCGG TACGGGCGGG CCGGAAGCCA CCGTGACCAA CCTGTGGGCC CAGGGCGGGT TCTTCCCGAA CGGCGTGCTC GGCCTGGTGA TGGCGATGGC CGTTATCATG TTCTCATTTG GCGGGCTGGA ACTGGTAGGG ATTACCGCAG CAGAAGCGGA TGACCCAGAG AAAAGCATTC CACGCGCGAC CAATCAGGTT ATCTACCGCA TCCTGATTTT CTACATCGGT TCACTCGCTA TCCTGCTGTC ACTTTACCCA TGGGGCAAGG TTGTAGAAGG CGGTAGCCCG TTCGTCATGA TTTTCCATGA ACTGAACAGT AACGTCGTAG CAACGGTGCT GAACATCGTG GTACTGACCG CCGCGCTGTC CGTTTACAAC AGCTGTGTGT ACTGTAACAG TCGCATGCTG TTCGGTCTGG CGAAACAGGG TAATGGACCA AAAGTACTGC AAACCGTCGA TCGCCGTGGC GTGCCGGTTG TCGCTATCGG TATCTCCGCG CTGGCGACAG CGCTGTGCGT ACTAATCAAC TACCTCATTC CCGGTAAAGC CTTCGAGCTG CTGATGGCGC TGGTCGTGTC CGCGCTTGTG ATTAACTGGG CGATGATCAG TCTGGCGCAC CTGAAGTTCC GCGCGCAAAA GGACAAAGAA GGCACCGTGA CCAAGTTTAA GGCACTGTTT TACCCGCTGG GTAACTACAT CTGCCTGCTG TTCCTGGCCG GTATACTGGT CATCATGTTC CTGACACCGG GCATTCAGAT TTCCGTCATG CTGATTCCGG TCTGGCTGAT TATTCTGGGT GTAGGCTACT TCATCAAAAA GAAAAATCAG GTGAACTAA
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Protein sequence | MDNQQTDGTL KRGLKNRHIQ LIALGGAVGT GLFLGIAQTI KMAGPSVLLG YAIGGLIAFL IMRQLGEMVV EEPVAGSFSH FAYKYWGDFA GFASGWNYWV LYVLVAMAEL SAVGIYVQYW WPDIPTWVSA AVFFLLINAI NLANVKVYGE MEFWFAIIKV AAIIGMIVFG GWLLLSGTGG PEATVTNLWA QGGFFPNGVL GLVMAMAVIM FSFGGLELVG ITAAEADDPE KSIPRATNQV IYRILIFYIG SLAILLSLYP WGKVVEGGSP FVMIFHELNS NVVATVLNIV VLTAALSVYN SCVYCNSRML FGLAKQGNGP KVLQTVDRRG VPVVAIGISA LATALCVLIN YLIPGKAFEL LMALVVSALV INWAMISLAH LKFRAQKDKE GTVTKFKALF YPLGNYICLL FLAGILVIMF LTPGIQISVM LIPVWLIILG VGYFIKKKNQ VN
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