Gene PC1_3550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3550 
SymbolulaA 
ID8134530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp3997959 
End bp3999218 
Gene Length1260 bp 
Protein Length419 aa 
Translation table11 
GC content53% 
IMG OID644866851 
ProductPTS system ascorbate-specific transporter subunit IIC 
Protein accessionYP_003019102 
Protein GI253689912 
COG category[S] Function unknown 
COG ID[COG3037] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATTCT TCCGTTTTTT AATGAGTGAT GTGCTGTCTG AACCCTCAAT ACTGGTGGGT 
TTGATCGCCC TTATCGGCCT GATTGCACAA AAGAAACCTG CCACGGAGTG CATCAAAGGC
ACCGTGAAAA CCGTGATGGG TTTCCTGATC CTCGGAGCAG GCGCCAGCCT GATTGTGTCC
TCGCTGGGCG ATTTCGCCGA GATTTTCCAC CATGCATTTG GTATTGCCGG TGTAGTCCCT
AACAATGAAG CCATTGTCGC CGTCGCGCAA AAGAACTTCG GCACCGAGAT GGCGATGATT
ATGTTCTTTG CGATGGTCAT TAATATCGCC ATCGCCCGCT TTACGCCGTG GAAATACATC
TTCCTGACCG GACACCACAC GCTGTTTATG TCGATGATGG TCGCGGTGAT TCTGGCGACA
GCAGGAATGA AAGGTGTGCT GCTGATTACC GTTGGGTCGC TGGTCGTCGG GGGATCGATG
GTGCTGTTCC CTGCCATCAT TCACCCGTAT ATGAAGAAAG TCACAGGCTC GGATGACGTC
GCCTTTGGTC ACTTCTCTGC GATATCACAG CTGCTGTCAG CGTTTATCGG CAGCAAATTT
GGTAATAAAG AGAAATCAAC CGAAGACATG GAAGTGCCGA AGAGTCTGCT GTTCCTGCGT
GATACGCCGG TCGCCATCGC GTTTACCATG TTTTTCATCT TCATTTTCAC CTGTCTGTTT
GCTGGCCCTG AAGCAGTGAA AACGATGAAC GCCGGTGGGA AAAACTGGTT CATGTTTTCG
CTGATTCAAT CCATTACCTT TGCCGCCGGC GTGTACATCG TGCTGCAAGG CGTGCGTATG
GTGATTGCGG AAATCGTGCC CGCGTTTAAA GGCATTTCGG ACAAACTGGT TCCCAATGCT
AAACCGGCAT TGGATTGCCC CGTCGTCTTC CCTTATGCGC CGAATGCCGT TCTGGTCGGC
TTCCTGAGCA GCTTTGCGGC TGGGGTGGTC GGTATGGTGC TGCTCTATCT GTTGGGTATG
ACGGTGATCA TTCCTGGCGT GGTGCCGCAC TTCTTCGTCG GTGCAGCAGC CGGGGTTTTC
GGTAACGCTA CTGGCGGGCG TCGCGGCGCG ATTTTAGGCT CTTTTGCCAA CGGACTGCTG
ATCACCTTCC TGCCCGTTTT TCTGCTGCCA GTACTGGGCA GTATCGGACT GGCAAACACG
ACATTCAGCG ATTCCGATTT CGGCGCGGTG GGGATTCTGC TGGGTATTAT CGTGCGCTAA
 
Protein sequence
MEFFRFLMSD VLSEPSILVG LIALIGLIAQ KKPATECIKG TVKTVMGFLI LGAGASLIVS 
SLGDFAEIFH HAFGIAGVVP NNEAIVAVAQ KNFGTEMAMI MFFAMVINIA IARFTPWKYI
FLTGHHTLFM SMMVAVILAT AGMKGVLLIT VGSLVVGGSM VLFPAIIHPY MKKVTGSDDV
AFGHFSAISQ LLSAFIGSKF GNKEKSTEDM EVPKSLLFLR DTPVAIAFTM FFIFIFTCLF
AGPEAVKTMN AGGKNWFMFS LIQSITFAAG VYIVLQGVRM VIAEIVPAFK GISDKLVPNA
KPALDCPVVF PYAPNAVLVG FLSSFAAGVV GMVLLYLLGM TVIIPGVVPH FFVGAAAGVF
GNATGGRRGA ILGSFANGLL ITFLPVFLLP VLGSIGLANT TFSDSDFGAV GILLGIIVR