| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3542 |
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| Symbol | |
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| ID | 8134522 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3990001 |
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| End bp | 3990690 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644866843 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_003019094 |
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| Protein GI | 253689904 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.352475 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCAGCTA CAGCCCCTAA ACACGCCCTG ATTACCGGTA GCAGCTCAGG GATCGGTGCC
GCCATCACAC AAAAATTACT GGCGGAAGGC TGGCGGGTAA CCGGCCTGTC GCGCAAGCCG
GGTGACTATT CACATCCACA CTTTACCCAC CGCGCGGTGG ATATCATGGA TACGCCCGCG
CTGACGGCCA TTCTGGACGA AATTGCACAG GTTGATGCCG TTATCCATGC TGCTGGCATT
ATGAAATCCG CCCCGCTCGG CCAGCTTTCG CTGGAAGATA GTGAAACGCT GTGGCGATTG
CATATCCATG CGGCACAGGT GCTTGCCGAT CGTCTGGTCG ATAAGCTGCC GCAAGGTGGC
CGCATCGTGC TGCTGGGCAG TCGCACGTCG AGCGGTTCAG CAGGACGCAG CCAATACGTC
ACGACCAAAT CCGCGATGAT CGGCATGGCA AGAAGCTGGG CGGCGGAACT GGCGCCACGC
GGCATTACAG TGAACATCGT CGCACCGGGT GCCACAGAAA CCCCGATGCT AACAATGCCG
GGCCGTCAGA GCTCACCACC GAAGCTGCCG CCAATTGGGC GCTTCATCCA GCCGCAAGAA
GTGGCCGATC TGGTGGGCTA CCTACTCTCC CCATCTGCCG CAGCCATTAC CGGCCAGCAG
TTGGTGATGT GCGGCGGCGC ATCGCTGTAA
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| Protein sequence | MSATAPKHAL ITGSSSGIGA AITQKLLAEG WRVTGLSRKP GDYSHPHFTH RAVDIMDTPA
LTAILDEIAQ VDAVIHAAGI MKSAPLGQLS LEDSETLWRL HIHAAQVLAD RLVDKLPQGG
RIVLLGSRTS SGSAGRSQYV TTKSAMIGMA RSWAAELAPR GITVNIVAPG ATETPMLTMP
GRQSSPPKLP PIGRFIQPQE VADLVGYLLS PSAAAITGQQ LVMCGGASL
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