Gene PC1_3521 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3521 
Symbol 
ID8134501 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp3965694 
End bp3966743 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content57% 
IMG OID644866822 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003019073 
Protein GI253689883 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGATAA TCGCATTTCT CACCCGCACT CGTCATCCGG GACGCATTCA CATCACCGAT 
ATCATGAGCT GGGTCTGGCT GGTGGTCGGC ACGCTGCTGG TGCTGATTCC AGTGATGTGG 
GCGGCGATGT CGTCGTTTAA AACGCCGGCG GAGATCAACC GCTTTCCGCC CAGCTTTCTG 
CCGCAGGCGG CGGATACCAT TACGCTACCG GAATACCCGA AGCCGCTGGA GCTGTGGCAG 
GTTAAGCAGG ACGATGGCGA CGCGAAAACG ATGGCGCTGG TGCGGCGCAT CGGCCTGATC 
GCGCAACTGG TGAACCCGGA TGCGCCGAGC GAGGTGGTAC GTGTACCGAC CAAAGATTTG 
GTGCCGATGA AAGCGCTGCA TCTGGAGATG GATAACTACG CCACGCCGCT GACGAAGTTC 
CACTTTACGA CGTACTTGAA GAACACCGTG TTCGTGACGG TGATGGCGAC GCTGCTGACC 
CTGTTGCTCA GTTCGATGGC GGCGTTTGCG CTGTCGAAAT ACGAATTTCG CGGGCGGGGT 
ACGGTGCTGA CGCTGTTTCT CTCCACCATG ATGATTCCGC TGTCGGTGGT CATGGTGCCG 
ACGTTCCTGG TGGTGATTGG CCTGAACATG GGCGATAACC TGTGGGGCGT GATTATTCCT 
ACGGTCGCGA CACCGACGGG CGTATTCCTG CTGCGGCAAT ATATGCTGAC CATCCCCGAT 
GAGCTGATCG AGGCGGCGCG CATCGATGCC GCCAGTGAGT TCCGTATTTA CTGGAAGATC 
ATCCTGCCGT TAACCGCCCC CGCGCTGGCC GTGCTGGCGA TTTTCTCGGT GATCTGGCGC 
TGGAACGATT TCCTCTGGCC GCTGATCGTC CTCTCCAGTC AGGATAATTT TACGCTGCAA 
ATCGGTCTGA ACGCGTTTCA GGGGCAGTTC TCGGTGCAGT GGCATTATAT ACTGGCGATG 
ACGATGCTCT CGCTTCTGCC GGTAACGGCA GTGTTCGTCT TCCTGCAAAA ATACATCACG 
ACGGGGATTG CCAACACGGG GATGAAATAA
 
Protein sequence
MKIIAFLTRT RHPGRIHITD IMSWVWLVVG TLLVLIPVMW AAMSSFKTPA EINRFPPSFL 
PQAADTITLP EYPKPLELWQ VKQDDGDAKT MALVRRIGLI AQLVNPDAPS EVVRVPTKDL 
VPMKALHLEM DNYATPLTKF HFTTYLKNTV FVTVMATLLT LLLSSMAAFA LSKYEFRGRG 
TVLTLFLSTM MIPLSVVMVP TFLVVIGLNM GDNLWGVIIP TVATPTGVFL LRQYMLTIPD 
ELIEAARIDA ASEFRIYWKI ILPLTAPALA VLAIFSVIWR WNDFLWPLIV LSSQDNFTLQ 
IGLNAFQGQF SVQWHYILAM TMLSLLPVTA VFVFLQKYIT TGIANTGMK