| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3504 |
|---|
| Symbol | |
|---|
| ID | 8134484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3948914 |
|---|
| End bp | 3950107 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644866805 |
|---|
| Product | aromatic amino acid aminotransferase |
|---|
| Protein accession | YP_003019056 |
|---|
| Protein GI | 253689866 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1448] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTTCAAA ACGTTGATAC CTATGCCGGA GATCCTATCC TGTCTCTGAT GGAAAAATTC
AAACAGGATC CAAGAGCGGA TAAGATCAAT TTGAGTATCG GGCTCTACTA CAACGAGCAG
AATATTATCC CGCAGTTGCG ATCTGTGAGT GCGGCAGAAA GCAGCCTGAA ACAGCCGACT
CAGAGCGCGA GTTCTTATCT GCCGATGGAA GGGTTACAGC CTTACCGTAC CGCGATCCAG
CAACTGCTGT TTGGTGCAAA CCATACGGCG CTGGAAGCCG GTCGCATCGC CACCATTCAG
ACGCTGGGCG GTTCCGGTGC GCTGAAAGTC GGTGCGGATT TCCTGAAACG TTACTTCCCG
AATTCAGAAG TGTGGGTCAG CGATCCAACA TGGGAAAACC ATATTGCGAT CTTTGAGGGC
GCGGGCTTTA ACGTTCACAC CTACCCGTAT TTCGATGGCG ACAGCCTGGG CGTGAAATTT
GATGCCATGC TGGCCACGCT GCAAACGCTG TCAGCGCGCA GCATCGTACT GCTGCATCCA
TGCTGCCACA ACCCGACCGG TTCTGACCTC ACCACCGAAC AGTGGGATCG CATCATTGAG
GTCATCATCC AGCGCGAGCT GATTCCGTTT ATGGACATCG CCTATCAGGG CTTTGGCCTC
GGGATCGATC AGGATGCCTA TGCGATTCGC GCCGTTGCCA GCGCGGGCGT TCCAGCACTC
ATCGCCAACT CGTTCTCCAA GATTTTCTCA CTGTATAGCG AGCGCGTCGG CGGCCTTTCC
GTGGTGTGTG ATGATGCCGA CAGCGCACAG CGCGTGCTGG GTCAGTTAAA AGCGACCGTC
CGCCGCAACT ACTCTTCCCC ACCGAATTTC GGCGCACAGG TGGTCTCTAA AGTCCTGAAC
GATGCACAGT TGAACGCTGA CTGGAAAGCA GAAGTCGAAG AAATGCGCAC CCGCATTCTG
AGTATGCGTC AGGAACTGGT GTCGGCACTG AAAAACGCGC TGCCGAACCG TAACTTCGAT
TACCTGCTCA CCCAGCGTGG CATGTTCAGC TACACCGGTT TCAGCCCGGA ACAGGTTGAT
CGTCTACGTG AAGAATTCGG CGTCTACCTG ATCGCCAGCG GTCGTATGTG TATAGCGGGG
CTGAACCACA GCAACGTCCA GCGCGTCGCT GCGGCTTTCG CCGCGATTCA GTAA
|
|---|
| Protein sequence | MFQNVDTYAG DPILSLMEKF KQDPRADKIN LSIGLYYNEQ NIIPQLRSVS AAESSLKQPT
QSASSYLPME GLQPYRTAIQ QLLFGANHTA LEAGRIATIQ TLGGSGALKV GADFLKRYFP
NSEVWVSDPT WENHIAIFEG AGFNVHTYPY FDGDSLGVKF DAMLATLQTL SARSIVLLHP
CCHNPTGSDL TTEQWDRIIE VIIQRELIPF MDIAYQGFGL GIDQDAYAIR AVASAGVPAL
IANSFSKIFS LYSERVGGLS VVCDDADSAQ RVLGQLKATV RRNYSSPPNF GAQVVSKVLN
DAQLNADWKA EVEEMRTRIL SMRQELVSAL KNALPNRNFD YLLTQRGMFS YTGFSPEQVD
RLREEFGVYL IASGRMCIAG LNHSNVQRVA AAFAAIQ
|
|---|
| |