Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3495 |
Symbol | |
ID | 8134475 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3939543 |
End bp | 3940565 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644866796 |
Product | tRNA-dihydrouridine synthase A |
Protein accession | YP_003019047 |
Protein GI | 253689857 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.396669 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGACG TAAAATCAGG TACACACCAC ACGGTATCTA CCGACTCTCG CGCTTCTCGC CTTAACCGCT TCTCCATCGC GCCGATGCTC GACTGGACCG ATCGTCATTG CCGTTACTTC CTTCGCCAGT TGAGCAGCCA GACGCTGTTG TATACCGAAA TGGTGACGAC AGGCGCGATT CTTCACGGTA AAGGCGACTA TCTAGCTTAT AGCGAAGAAG AACATCCGCT GGCGCTACAG CTCGGTGGGA GCGATCCGCA AGCGCTGGCG CAGTGTGCCA AACTGGCAGA ACAGCGCGGC TATGATGAAG TTAACCTGAA CGTCGGCTGC CCGTCTGACC GTGTACAGAA TGGTCGTTTC GGCGCCTGTC TGATGGGCGA AGCGTCACTG GTCGCGGACT GCATCAAGGC GATGAAAGAC AGCACCTCAA TCCCGATTAC GGTGAAAACC CGCATCGGCA TTGACGATCA AGACAGCTAT GCATTCCTGT GCGACTTTAT TCAAACCGTT GCCGAACTCG GCGAGTGTGA GACGTTTATC GTCCACGCGC GCAAAGCCTG GCTATCAGGT CTTAGCCCGA AAGAGAATCG GGAAATTCCG CCGCTGGATT ATCCGCGCGT TTACCAGCTC AAGCGTGATT TTCCCGCGCT CACCATCGCC ATTAACGGCG GTGTCAAAAC GCTGGAAGAA GCCAAAACGC ACTTACAACA TCTGGATGGC GTGATGATGG GGCGTGAGGC CTATCAGAAT CCCGGTATTC TGGCGCAGGT CGACCGCGAG CTGTTTGGCA TCGACGCTGC AACACCAGAT CTGGCTGGCG TCGTACGAAC CATGTACCCC TATATCGAGC GCGAACTCTC CGGCGGCGCG GCATTAGGCC ACATCACGCG CCACATGCTC GGCATGTTTC AGGGCATTCC CGGCGCGCGT CAATGGCGAC GCTATCTTAG TGAAAATGCT CACAAACCCG GTGCCGATGC TGCGGTGGTA GAACGTGCAT TAGCGCTAGT TAATCTGGTG TAA
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Protein sequence | MTDVKSGTHH TVSTDSRASR LNRFSIAPML DWTDRHCRYF LRQLSSQTLL YTEMVTTGAI LHGKGDYLAY SEEEHPLALQ LGGSDPQALA QCAKLAEQRG YDEVNLNVGC PSDRVQNGRF GACLMGEASL VADCIKAMKD STSIPITVKT RIGIDDQDSY AFLCDFIQTV AELGECETFI VHARKAWLSG LSPKENREIP PLDYPRVYQL KRDFPALTIA INGGVKTLEE AKTHLQHLDG VMMGREAYQN PGILAQVDRE LFGIDAATPD LAGVVRTMYP YIERELSGGA ALGHITRHML GMFQGIPGAR QWRRYLSENA HKPGADAAVV ERALALVNLV
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