Gene PC1_3495 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3495 
Symbol 
ID8134475 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp3939543 
End bp3940565 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content56% 
IMG OID644866796 
ProducttRNA-dihydrouridine synthase A 
Protein accessionYP_003019047 
Protein GI253689857 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00742] tRNA dihydrouridine synthase A 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.396669 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGACG TAAAATCAGG TACACACCAC ACGGTATCTA CCGACTCTCG CGCTTCTCGC 
CTTAACCGCT TCTCCATCGC GCCGATGCTC GACTGGACCG ATCGTCATTG CCGTTACTTC
CTTCGCCAGT TGAGCAGCCA GACGCTGTTG TATACCGAAA TGGTGACGAC AGGCGCGATT
CTTCACGGTA AAGGCGACTA TCTAGCTTAT AGCGAAGAAG AACATCCGCT GGCGCTACAG
CTCGGTGGGA GCGATCCGCA AGCGCTGGCG CAGTGTGCCA AACTGGCAGA ACAGCGCGGC
TATGATGAAG TTAACCTGAA CGTCGGCTGC CCGTCTGACC GTGTACAGAA TGGTCGTTTC
GGCGCCTGTC TGATGGGCGA AGCGTCACTG GTCGCGGACT GCATCAAGGC GATGAAAGAC
AGCACCTCAA TCCCGATTAC GGTGAAAACC CGCATCGGCA TTGACGATCA AGACAGCTAT
GCATTCCTGT GCGACTTTAT TCAAACCGTT GCCGAACTCG GCGAGTGTGA GACGTTTATC
GTCCACGCGC GCAAAGCCTG GCTATCAGGT CTTAGCCCGA AAGAGAATCG GGAAATTCCG
CCGCTGGATT ATCCGCGCGT TTACCAGCTC AAGCGTGATT TTCCCGCGCT CACCATCGCC
ATTAACGGCG GTGTCAAAAC GCTGGAAGAA GCCAAAACGC ACTTACAACA TCTGGATGGC
GTGATGATGG GGCGTGAGGC CTATCAGAAT CCCGGTATTC TGGCGCAGGT CGACCGCGAG
CTGTTTGGCA TCGACGCTGC AACACCAGAT CTGGCTGGCG TCGTACGAAC CATGTACCCC
TATATCGAGC GCGAACTCTC CGGCGGCGCG GCATTAGGCC ACATCACGCG CCACATGCTC
GGCATGTTTC AGGGCATTCC CGGCGCGCGT CAATGGCGAC GCTATCTTAG TGAAAATGCT
CACAAACCCG GTGCCGATGC TGCGGTGGTA GAACGTGCAT TAGCGCTAGT TAATCTGGTG
TAA
 
Protein sequence
MTDVKSGTHH TVSTDSRASR LNRFSIAPML DWTDRHCRYF LRQLSSQTLL YTEMVTTGAI 
LHGKGDYLAY SEEEHPLALQ LGGSDPQALA QCAKLAEQRG YDEVNLNVGC PSDRVQNGRF
GACLMGEASL VADCIKAMKD STSIPITVKT RIGIDDQDSY AFLCDFIQTV AELGECETFI
VHARKAWLSG LSPKENREIP PLDYPRVYQL KRDFPALTIA INGGVKTLEE AKTHLQHLDG
VMMGREAYQN PGILAQVDRE LFGIDAATPD LAGVVRTMYP YIERELSGGA ALGHITRHML
GMFQGIPGAR QWRRYLSENA HKPGADAAVV ERALALVNLV