| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3486 |
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| Symbol | |
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| ID | 8134466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3931500 |
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| End bp | 3932762 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644866787 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_003019038 |
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| Protein GI | 253689848 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.54113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTCACG ATCTGAATGA CGTAACACAT GCTCTGAACG CGCAAAGCCT GCGTGAACTG
CCTGCCCGCT TTGGTTGCCC GGTTTGGGCC TATGACGCGC AGACCATCGT TAACCGTATC
GCTCAACTGC GCCAGTTCGA CACGATTCGC TTTGCGCAGA AGGCGTGTTC CAACACGCAC
ATTTTGCGCC TGATGCGTGA GCAGGGTGTG AAAGTCGATT CAGTATCGCT GGGTGAGATC
GAGCGTGCGT TGATCGCAGG CTTTGTGCCG GGCACCGATG CACATGAGAT CGTGTTTACT
GCCGATCTGC TGGATCGCCC GACGCTGCAA CGTGTGTCTG AGCTGAATAT TCCGGTGAAC
GCCGGTTCGG TCGATATGCT GGAACAGCTT GGTCAGCAGT CGCCGGGGCA TCCGGTGTGG
CTGCGCGTGA ATCCGGGCTT TGGTCATGGT CACAGCCAGA AAACCAATAC CGGCGGCGAG
AACAGCAAGC ACGGTATCTG GTACGGCGAT TTGCCGCTGG CGCTGGCACA CATTCAGCGC
TACCAACTGA AGCTGGTGGG CATCCACATG CATATCGGTT CCGGTGTTGA TTACGGCCAT
TTGGAGCAGG TGTGTGAAGC GATGGTACGT CAGGTCGTTG AGTTGGGTCA GGATATCGAG
GCGATTTCAG CAGGCGGTGG GCTGTCGATT CCCTATCGTC ATGGCGAGGA AGCGATTGAT
ACCGAACACT ATTACGGCCT GTGGAACGCG GCACGTGAGA AAATTGCTGC GCACCTCGGC
CATCCGGTGA CGCTGGAAAT CGAGCCAGGA CGTTTTCTGG TCGCGGAATC CGGTGTGCTG
GTGGCGGAAG TACGGGCGGT CAAATCCATG GGGAGCCGCC ACTTTGTGCT GGTTGATGCC
GGGTTTAACG ACCTGATGCG TCCGGCGATG TACGGCAGCT ATCACCATGT TTCTCTGCTG
CCGGGCGATG GCCGTGATAT CAGCCAGTCC ACCTTGCGTG ACAGCGTGAT TGCCGGTCCG
CTGTGTGAAT CCGGCGATGT GTTTACCCAA CAGGCTGGCG GCGGCGTGGA AACGTTCGCG
CTCCCGGATG CGCAGGTTGG CGACTATCTG GTCTTCCACG ATACTGGCGC ATACGGTGCA
TCCATGTCCT CGAACTACAA CAGTCGTCCG CTGCTGCCGG AAGTGCTGTT TGAAAATGGC
GAGCCGCGCC TGATTCGCCG CCGTCAGACG CTGGACGAGC TACTGGCGCT GGAAGCACTT
TAA
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| Protein sequence | MPHDLNDVTH ALNAQSLREL PARFGCPVWA YDAQTIVNRI AQLRQFDTIR FAQKACSNTH
ILRLMREQGV KVDSVSLGEI ERALIAGFVP GTDAHEIVFT ADLLDRPTLQ RVSELNIPVN
AGSVDMLEQL GQQSPGHPVW LRVNPGFGHG HSQKTNTGGE NSKHGIWYGD LPLALAHIQR
YQLKLVGIHM HIGSGVDYGH LEQVCEAMVR QVVELGQDIE AISAGGGLSI PYRHGEEAID
TEHYYGLWNA AREKIAAHLG HPVTLEIEPG RFLVAESGVL VAEVRAVKSM GSRHFVLVDA
GFNDLMRPAM YGSYHHVSLL PGDGRDISQS TLRDSVIAGP LCESGDVFTQ QAGGGVETFA
LPDAQVGDYL VFHDTGAYGA SMSSNYNSRP LLPEVLFENG EPRLIRRRQT LDELLALEAL
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