Gene PC1_3450 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3450 
Symbol 
ID8134430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp3897310 
End bp3898023 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content55% 
IMG OID644866751 
Productalanine racemase domain protein 
Protein accessionYP_003019002 
Protein GI253689812 
COG category[R] General function prediction only 
COG ID[COG0325] Predicted enzyme with a TIM-barrel fold 
TIGRFAM ID[TIGR00044] pyridoxal phosphate enzyme, YggS family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000700042 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGACAA TCCAGCAGAA TCTACAGGAC ATCCGGCAAC AAATCGCCAC CGCCGCTGCG 
CATTGCGCGC GGGCACCAGA AGACATTACG CTACTTGCAG TCAGTAAAAC CAAACCTGTG
AGCGCGATCG AAGAAGCCAT CGCGGCAGGG CAACAGGCGT TTGGCGAGAA CTATGTTCAG
GAAGGCGTGG AGAAGATTCA TTATTTCCAG GAAAACCACC CGGATACACC GCTGGAATGG
CACTTTATCG GCCCGTTACA GTCAAACAAA AGTCGGCTGG TGGCCGAGAA TTTTGACTGG
TTTCATACCG TAGATCGTTT GCGCATCGCG CAGCGTCTGA GTGAACAACG TCCGGCCACG
CTGCCGCCGT TAAACGTTCT GTTGCAGATT AATATCAGCG GCGAACCAAG CAAATCCGGC
ATTATGGTCG ATGAACTGGC GGAACTCGCC GCTGGCGTCG CCGCGCTGCC CAACCTGCGC
CTGCGTGGGC TGATGGCGAT CCCGGCACCG GAAACCGATT ATGAACAGCA GTTGGTCGTT
TTCAAACAAA TGGCAGCACT GTTCCAAACG TTGTCCGCAA CTTATCCGCA TATTGATACA
CTCTCTATGG GGATGACGGA CGACATGCGC GCGGCGATTA CCGCTGGCAG CACGCTGGTG
CGTATTGGCA CGGCAATCTT TGGCGCGCGG GACTATGCAG CAAAAAGCGT ATAA
 
Protein sequence
MTTIQQNLQD IRQQIATAAA HCARAPEDIT LLAVSKTKPV SAIEEAIAAG QQAFGENYVQ 
EGVEKIHYFQ ENHPDTPLEW HFIGPLQSNK SRLVAENFDW FHTVDRLRIA QRLSEQRPAT
LPPLNVLLQI NISGEPSKSG IMVDELAELA AGVAALPNLR LRGLMAIPAP ETDYEQQLVV
FKQMAALFQT LSATYPHIDT LSMGMTDDMR AAITAGSTLV RIGTAIFGAR DYAAKSV