| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3448 |
|---|
| Symbol | |
|---|
| ID | 8134428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3894477 |
|---|
| End bp | 3896303 |
|---|
| Gene Length | 1827 bp |
|---|
| Protein Length | 608 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644866749 |
|---|
| Product | diguanylate cyclase with PAS/PAC and GAF sensors |
|---|
| Protein accession | YP_003019000 |
|---|
| Protein GI | 253689810 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.838223 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATC AGTCAGTTGA TTTGATTACC AGGTTTGACA GTGAAGCCAA ACTACACGCA
CTTGATTCCA TTTATGCCAT CGCCGAATTC GATCTGGCAG GGAAACTGGT TGAGGCCAAT
CCTCTTTTTT GCAAAATGCT AGGCTATAAA AAAGAAGATA TTATTCAGAA AAATCACACG
TTTTTTCTGC CAGAAGCACA ACGTAAAAAA CACGATCATT TTTGGCACGA TGTGGTTAAA
GGAAATATCA ACGCAGGGGA ATTCCAGCGA AAAACCCAAA AAGGAGAAAT TATTTGGCTC
CATGCGGCTT ATACGCCAAT TATCGATGAC AAAGGCCGAC ATATCGGCAT CATAAAACTG
GCAACGGATA TTACGCAGGA AAAACTTCTC GTGTCAGAAC ATCGTGCACG GTTAGATGCA
ATTGAGAACG CGCAAGGCGT CATTGAGTTT GATAAAGATG GCTATATCAC TCATATCAAT
AAACATTATC TGGTGCTGAC AGGCTATGAG GAAAAAGACT TACTCGGTCA GCACCATCGT
CTACTCTGCA ACCCTGTTGA TACTGAACAA ACAGCGTATC AAACATTTTG GGAAACCTTA
CACCGCGGCC ACCCCATCAG CGGACGGTTC CATCGACTGG GCAAAGGCAG CCATTCATAC
TGGATACAAG CGACCTACAG TCCGATCATG GATAGTGACG GCAATGTGCG AAAAATCATT
AAATATGCCC ACAACATCAC GCAAAACGTC GAAACCGAAA AGAAAGCCCA TCAGCAAGGC
ATCATTCTCG ATATCCTATT GTCAGTCCAC GACAGCTTTC TCCTCGACCA TAATCTGCTT
TCCGCCTGCG ACAAAGTCTT TGAGCGACTG CTTAATGTCA CCAACAGCAC CTTTGGCTTC
ATTGCCACAT TGCAGGAAGA CGAAGACGGC CAGTCGCTCT ACCTTCCCGC GATATCCAAC
CTTACCTGGG ATGAAGAAAC CCTGAACTGG TACAGAAACC AGCGCAGAAC CCACGGCGGC
CTGAGGATCC GTAAACTGGA TAATCTGTTT GGTCACGTGG TGACCCACAA TACGGTGGTG
TGCACCAATA ACCTGCTGAG GCAAAAGGCA GGACGGGATC TCCCGCCCAT TCACCCCGCA
CTGTATTCCC TGCTTGGTAT TCCTATCACC CACAACGGCA AAGCGCTTGG CATGATCGCG
CTGGCCAATC GCCGGGAAGG TTACGATCAA ACGATGATCG AGCTGCTGGC TCCGCTGGTG
AAGACGCTTG GCATCATCAT TCACGCGCGT TCACTGGAAG ATGAGCGCAC ACAGATAGAA
GCCTCACTGC GCTTTAGCGC GGGGCATGAT TTTCTTACTG GCCTGCCGAA TCGCAGCAGC
TTCTTCGAAC AGGCCAATGC CTTTTTTCTC CACAATCAGC AAAACCAACA GACGGATAAA
AGCTGTCTGG CCATTATTGA TATCGATTTA TTCAAAAACA TTAACGATCA ATATGGTCAT
TTGGCTGGCG ATGCCGTCCT CAAAGAGCTG GCAGTGCTCA TGCGCATGTC GCTGCGTCAG
GAAGATCTGG TCGCCCGCCT CGGCGGTGAG GAGTTCATCA TCCTGTTAAA AGATATCTCT
TACCAAACGG CGATGATGAC CATTGAACGT ATTCGTAAAG CGATTGAGCA GCACACGCTG
GAATACGATC GCCAGACTCT GCATTTCACG ATCAGCGCAG GCATTGCCGC TTACCGTTCC
GATCTTGCTT CCGTTGAGGA CTGGATTCAG TTAGCCGATG CAAACCTCTA TGCGGCTAAA
CGGCAAGGGC GCAATTGTGT GAAATAA
|
|---|
| Protein sequence | MNNQSVDLIT RFDSEAKLHA LDSIYAIAEF DLAGKLVEAN PLFCKMLGYK KEDIIQKNHT
FFLPEAQRKK HDHFWHDVVK GNINAGEFQR KTQKGEIIWL HAAYTPIIDD KGRHIGIIKL
ATDITQEKLL VSEHRARLDA IENAQGVIEF DKDGYITHIN KHYLVLTGYE EKDLLGQHHR
LLCNPVDTEQ TAYQTFWETL HRGHPISGRF HRLGKGSHSY WIQATYSPIM DSDGNVRKII
KYAHNITQNV ETEKKAHQQG IILDILLSVH DSFLLDHNLL SACDKVFERL LNVTNSTFGF
IATLQEDEDG QSLYLPAISN LTWDEETLNW YRNQRRTHGG LRIRKLDNLF GHVVTHNTVV
CTNNLLRQKA GRDLPPIHPA LYSLLGIPIT HNGKALGMIA LANRREGYDQ TMIELLAPLV
KTLGIIIHAR SLEDERTQIE ASLRFSAGHD FLTGLPNRSS FFEQANAFFL HNQQNQQTDK
SCLAIIDIDL FKNINDQYGH LAGDAVLKEL AVLMRMSLRQ EDLVARLGGE EFIILLKDIS
YQTAMMTIER IRKAIEQHTL EYDRQTLHFT ISAGIAAYRS DLASVEDWIQ LADANLYAAK
RQGRNCVK
|
|---|
| |