| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3445 |
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| Symbol | |
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| ID | 8134425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3889137 |
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| End bp | 3891593 |
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| Gene Length | 2457 bp |
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| Protein Length | 818 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644866746 |
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| Product | exoribonuclease R |
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| Protein accession | YP_003018997 |
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| Protein GI | 253689807 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.866643 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACAAG ATCCATTCCT GGAACGAGAA GCAGAAAAAT ACGAATCCCC CATCCCCAGT
CGTGAATATA TTTTGGCGCA CATCGCCAAG CGCGATACCC CGATTAGCCG GGAAGAATTA
GCCGCCGACC TACAATTAAC CGGAGAAGAA CCTCTCGAAG CACTGCGCCG CCGCCTGCGT
GCGATGGAGC GCGACGGTCA GCTTATTTTT ACCCGCCGCC AGTGTTATGC GTTGCCGGAA
AAACTCGATC TGCTGCGTGG GACGGTTATT GGTCACCGCG ATGGCTTTGG CTTCCTGCGT
GTGGAAGGCC GTAAAGACGA TCTTTATCTG TCGGCTGAAG AGATGAAACG GGCGATTCAC
GGCGATGTCG TGCTGGCACA GCCGCTGGGC GCGGATCGTA AAGGCCGTCG TGAAGGGCGC
ATCGTGCGCG TGCTGGAACC GCGTACCGGA CAAATTGTCG GCCGCTATTT TGTCGATGCC
GGTGTCGGGT TCGTAGTGCC GGATGACAGT CGTCTGAGCT TTGATATTCT GATCCCGAAA
GAAGAAATTA ACGGCGCCCG CATGGGCTTT GTGGTGGTGG TTGAACTGAC GCAACGCGCC
ACGCGCCGCA CGAAGGCGGT CGGTAAGATC GTCGAGATCC TCGGTGATAA CATGGGAACC
GGGCTGGCGG TGGATATCGC CCTGCGTACC CACGATATTC CGCACACCTG GCCACCGAAA
GTGGAAGAAC AGGTGAAAGA TCTTGCCGAG GAAGTGCCGG AAGCGGCGAA AAAAGGTCGT
GTGGATCTGC GTAAGCTGCC GCTGGTGACG ATTGACGGCG AAGATGCCCG CGATTTTGAT
GACGCCGTGT ACTGCGAGAA GAAACGCGGC GGCGGCTGGC GGCTGTGGGT TGCCATCGCG
GACGTGAGCT ACTATGTACG GCCGAATACG CCGCTCGATC ATGAAGCGCG GGCGCGTGGC
ACCTCGGTGT ACTTCCCGTC GCAGGTGGTA CCGATGCTGC CGGAAGTGCT GTCGAACGGA
CTATGTTCGC TTAACCCGCA GGTTGACCGT CTGTGTATGG TCTGTGAAAT GACGGTATCG
GCACAGGGCA AGCTGTCGTC CTACAAATTC TATGAAGCGG TGATGAGTTC ACACGCGCGT
CTGACCTACA CCAAAGTGTG GAATATTCTG CAAGGTGACG CCGAGCTGCG TGAGCATTAC
AAACCGCTGG TGGGTGGGCT GGAAGAGCTG CACCACATGT ATAAGGTGCT TGAGCACGCG
CGTGAAGTGC GCGGCGGTAT TGCGTTTGAA ACCGAAGAAG CGAAGTTCAT TTTCAACGCT
GAGCGCCGTA TCGATCGTGT GGAAGCCGTG GTGCGTAACG ATGCCCATAA GCTGATCGAA
GAGTGCATGA TTCTGGCGAA TATCTCCGCC GCGAAATTTG TGGAGAAAAA CGAAGAGCCA
GCGCTGTTCC GTGTACACGA TCAGCCGAGT GAAGATCATG TATTAGCTCT GCGCAGCGTG
CTGGGCGAAC TGGGTCTGAC GCTGAAAGGT GGAATGAAAC CACAGCCGAA AGACTATGCG
GAATTGATGA ATGAGGTGGC GGATCGCCCC GATCGGGAAA TGCTGCAAAC CATGCTGCTG
CGTTCCATGA AACAGGCGAT TTATGACCCG GAAAACCGGG GGCACTTCGG GTTGGCATTG
ACGTCTTACG GCCACTTTAC GTCGCCGATT CGTCGTTATC CTGACCTGTC GCTGCACCGC
GCGATTAAAT ATCTGCTGAG CAATCGCCAT GAGCGTTGGA CACCGACGGG TGGCTGGCAC
AGCGATATTA ACGAGATGCT ACAGCTGGGT ATGCACTGTT CGATGACGGA GCGCCGGGCG
GATGAAGCCA CGCGCGACGT TGCGGACTGG CTGAAGTGCG ACTTTATGCA GGATCACGTG
GGTGAAGTCT TTACGGGAAT CATCTCCAGC GTGACCGGTT TTGGCTTCTT CGTACGCCTG
AAAGATCTGT TCATCGATGG ATTGGTGCAC GTTTCTACGC TGGATAATGA CTACTACCGT
TACGATAATA TCGGTCAGCG GCTGATCGGT GAATCGCGTG GGCAGGTTTA TCGTCTGGGT
GATGAAGTCG AAATTCGCGT TGAAGCGGTG CATATGGATG AGCGCAACAT TGATTTTGCG
CTGATTTCCA GCACGCGTAA GGTTCGTGGT GAAGGGAAAA CCGCGCGCGA CCGTGCGAAG
AAACCGGATT CGCGTGAGGC TAAGCCAGCT CGACGTCGTC GCAGCGCCAG CAAAGCGCCG
GCAAACTTTG AGCCGGATGC CGCCTTCCGC AAAGAAGGCG ACCGCAACGC GAAATCGGAT
AAGCCAAAAG CCAAGCCGAA AAAGAACCGC GATAAAGCGA AAAAGAACGC GGAAAAAACG
CGTAAAATCG CCGCCGCAAC CAAAGCGAAA CGAGCAAAGA AAAAGTCTGC TGAGTAA
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| Protein sequence | MSQDPFLERE AEKYESPIPS REYILAHIAK RDTPISREEL AADLQLTGEE PLEALRRRLR
AMERDGQLIF TRRQCYALPE KLDLLRGTVI GHRDGFGFLR VEGRKDDLYL SAEEMKRAIH
GDVVLAQPLG ADRKGRREGR IVRVLEPRTG QIVGRYFVDA GVGFVVPDDS RLSFDILIPK
EEINGARMGF VVVVELTQRA TRRTKAVGKI VEILGDNMGT GLAVDIALRT HDIPHTWPPK
VEEQVKDLAE EVPEAAKKGR VDLRKLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA
DVSYYVRPNT PLDHEARARG TSVYFPSQVV PMLPEVLSNG LCSLNPQVDR LCMVCEMTVS
AQGKLSSYKF YEAVMSSHAR LTYTKVWNIL QGDAELREHY KPLVGGLEEL HHMYKVLEHA
REVRGGIAFE TEEAKFIFNA ERRIDRVEAV VRNDAHKLIE ECMILANISA AKFVEKNEEP
ALFRVHDQPS EDHVLALRSV LGELGLTLKG GMKPQPKDYA ELMNEVADRP DREMLQTMLL
RSMKQAIYDP ENRGHFGLAL TSYGHFTSPI RRYPDLSLHR AIKYLLSNRH ERWTPTGGWH
SDINEMLQLG MHCSMTERRA DEATRDVADW LKCDFMQDHV GEVFTGIISS VTGFGFFVRL
KDLFIDGLVH VSTLDNDYYR YDNIGQRLIG ESRGQVYRLG DEVEIRVEAV HMDERNIDFA
LISSTRKVRG EGKTARDRAK KPDSREAKPA RRRRSASKAP ANFEPDAAFR KEGDRNAKSD
KPKAKPKKNR DKAKKNAEKT RKIAAATKAK RAKKKSAE
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