Gene PC1_3422 details

Gene Information

• Locus tag: PC1_3422
• Symbol: cpdB
• ID: 8134402
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 3869952
• End bp: 3871904
• Gene Length: 1953 bp
• Protein Length: 650 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 644866723
• Product: bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
• Protein accession: YP_003018974
• Protein GI: 253689784
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
• TIGRFAM ID: [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.595629
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCATT CACTGGCACT CAGCCTGCTT GCTACGCTGG TCGCCACGAC CGTTCATGCC 
GCTACCGTTG ATCTACGGGT ATTGGAAACC ACCGATCTGC ACAGCAATAT GATGGATTTC 
GATTACTACA AGGATACGCC AACCGATAAA TTTGGTCTGG TGCGCACTGC CAGCCTGATT 
CACGCCGCGC GCGAACAGGC TGGCAACAGC GTGCTGGTCG ATAACGGCGA CCTGATTCAG 
GGCAGCCCGT TAGGTGACTA TATGGCGGCA AAAGGGTTGA AAGCTGGCGA TGTGCATCCG 
GTTTATCAGG CGATGAATAC GCTGGACTAT TCTGTCGGCA ACATCGGTAA CCACGAATTC 
AACTATGGAC TGGACTACCT GCATAAGGCG CTGTCAGGGG CGAAGTTCCC TTATGTGAAC 
GCCAACGTGC TGGATGCCAA AACGGGTAAA CCGCTGTTTA CGCCTTACCA CATTGAAAAC 
AAATCGGTTA AAGACCGCGA CGGCAAACAG CATACCCTGC GCATCGGTTA TATTGGCTTC 
GTTCCACCGC AGATCATGGT GTGGGATAAA GCCAATCTGA CAGGAAACGT GACCGTCGAA 
GACATCACGG AAAGTGCCAA AAAATGGGTG CCGGAAATTC GTAAGCAAGG CGCCGATCTG 
GTGATTGTTA TCCCCCACTC CGGCCTATCT GCCGAACCGT ACAAAGCGAT GGCAGAAAAC 
TCCGTTTACT ACCTCAGCCA AATTCCTGGC GTCGACGCGA TCATGTTTGG CCATGCGCAC 
GCAGTATTCC CCAGCAATGA CTTTGCAAAC ATCAAGGGTG CTGACATCAA ACAGGGAACG 
CTCAACGGTG TGCCTGCGGT GATGCCGGGG CAATGGGGTG ACCACCTTGG CGTCGTCGAT 
TTTACGTTGA ATAACGACAG CGGCACATGG AAGGTGGAAA GTGCGAAAGC AGAAGCCAGA 
CCTATCTATG ACAAAACGCA GAAGAAATCA CTGGCAGCGG AAGACGATAA GCTGGTGAAA 
GTCCTCGCTG ACGCGCACAA AGACACACGC GAGTTCGTCA GCAAGCCAAT CGGCAAATCC 
GCAGACAACA TGTATAGCTA CCTGTCGCTG ATTCAGGACG ATCCTACCGT GCAGATCGTC 
AACAATGCTC AGCGCGCCTA TGTAGAACAC TTTATTCAGG GCGATCCCGA TCTGGCCGAT 
CTGCCGGTGC TTTCCGCTGC CGCGCCGTTT AAAGCCGGTG GACGTAAAAA CGATCCGGCC 
AGCTATGTCG AAGTGGAAAA AGGCCAACTC ACCTTCCGTA ACGCGGCCGA TTTGTACCTT 
TACCCCAATA CGCTGGTGGT GGTGAAAGTT AATGGACAGC AGGTGCAGGA GTGGCTGGAA 
TGCTCTGCGG GTCAGTTCAA ACAAATCGAT CCAAGCAAGC GTGAACCGCA ATCCCTGCTT 
AACTGGGACG GCTTCCGCAC GTATAACTTC GACGTGATCG ATGGCGTCAA CTATCAGATT 
GATGTAACGC AGCCTGCCCG CTATGACAGC GAGTGCGCGT TAATCAACGA TAAAGCACAC 
CGCATCAAGG CGCTGACGTT TAACGGCAAA CCGATCGATC CTAAAGCGAC CTTCCTGATT 
GCTACCAACA ACTACCGCGC CTACGGCGAG AAATTTGCCG GTACGGGTGA GAAGTATGTG 
GCCTTTGCAT CCCCGGATGA AAACCGCTCC GTTTTGGCGG CCTACATCAG CGCGGAAACG 
CAAAAATCGG GAGAAGTGAA ACCGCAGGCG GATAACAACT GGCGTTTGGC ACCTATCGTC 
AGCGACACGC CGCTGGATAT CCGTTTTGAA ACGTCACCGT CAGAGAAAGC CACGGCGTTT 
ATCAAAGAGA AAGCCCAGTA TCCGATGACG CACGTCGGCA ATGATGAAAC AGGCTTTGCG 
GTTTATCGCC TTGACCTGCA ACAGGCTAAA TAA 

 

Protein sequence

MKHSLALSLL ATLVATTVHA ATVDLRVLET TDLHSNMMDF DYYKDTPTDK FGLVRTASLI 
HAAREQAGNS VLVDNGDLIQ GSPLGDYMAA KGLKAGDVHP VYQAMNTLDY SVGNIGNHEF 
NYGLDYLHKA LSGAKFPYVN ANVLDAKTGK PLFTPYHIEN KSVKDRDGKQ HTLRIGYIGF 
VPPQIMVWDK ANLTGNVTVE DITESAKKWV PEIRKQGADL VIVIPHSGLS AEPYKAMAEN 
SVYYLSQIPG VDAIMFGHAH AVFPSNDFAN IKGADIKQGT LNGVPAVMPG QWGDHLGVVD 
FTLNNDSGTW KVESAKAEAR PIYDKTQKKS LAAEDDKLVK VLADAHKDTR EFVSKPIGKS 
ADNMYSYLSL IQDDPTVQIV NNAQRAYVEH FIQGDPDLAD LPVLSAAAPF KAGGRKNDPA 
SYVEVEKGQL TFRNAADLYL YPNTLVVVKV NGQQVQEWLE CSAGQFKQID PSKREPQSLL 
NWDGFRTYNF DVIDGVNYQI DVTQPARYDS ECALINDKAH RIKALTFNGK PIDPKATFLI 
ATNNYRAYGE KFAGTGEKYV AFASPDENRS VLAAYISAET QKSGEVKPQA DNNWRLAPIV 
SDTPLDIRFE TSPSEKATAF IKEKAQYPMT HVGNDETGFA VYRLDLQQAK