| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3418 |
|---|
| Symbol | |
|---|
| ID | 8134398 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3866450 |
|---|
| End bp | 3867778 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644866719 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003018970 |
|---|
| Protein GI | 253689780 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1253] Hemolysins and related proteins containing CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGTTAA ACAGTCTATT GCTGATTCTT TGTCTCATTG CCATCAGTGC GTTCTTCTCG
CTGTCCGAGA TCTCGCTGGC GGCATCCCGT AAAATTAAAC TCAAGCTGAT GGCCGATGAG
GGAAATATCA ACGCCGATCT GGTGCTCAAG TTTCAGGAAA CGCCGGGCAT CTTCTTTACC
GTGATTCAAA TTGGCGTCAA CGCCGTCGCG ATTCTGGCCG GTATCATCGG CGATGCGGCA
TTTTCTCCAA CGTTTTCTAT GTTGTTTGAA CGCTTCATGT CACCCGAAGC CGCCGATAAA
GTTAGCTTCA TCTGCTCATT CGTACTCGTC ACCAGCCTGT TCATCCTGTT TGGCGATCTC
ACCCCGAAAC GCATTGGTAT GATTGCGCCA GAAGCCGTCG CGGTTCGCAT AATCAACCCC
ATGCGCTTCT GCCTATTCCT CTTCCGTCCG CTGGTTTGGA TCTTTAACGG ATTGGCTAAC
GTTATTTTCC GTCTGCTCAA GCTGCCGATG GTGCGTAAAG ATGACATCAC GTCCGATGAT
ATTTACGCCG TAGTAGAAGC TGGTGCGCTG GCTGGCGTCC TGCGTAAGCA GGAACACGAA
CTGATCGAGA ACGTGTTTGA ACTGGAATCC CGCACCGTAC CCTCTTCGAT GACCTCACGC
GAAAGTGTGG TCTACTTCGA TCTGCGCGAG CAGGAAGACA GCATTAAGGA AAAAATCGCT
CAGCAGCCAC ATTCCAAGTT TTTGGTTTGT GATGGCACAA TCGATCAGAT CGTCGGCTAC
GTGGACTCCA AAGACCTGCT GATTCGGGTG TTGGGAAACC AGAGCCTGAC GCTAAGCAGC
GGCGTGCAGA TCCGTCCGGC GCTGATCGTA CCGGATACGC TGACGCTGTC CGAAGCGTTG
GAAAGTTTCA AAACGGCGGG GGAAGACTTC GCAGTCATTC TGAACGAATA TGCGCTGGTC
GTCGGCATCA TCACGCTTAA CGACGTGATG ACCACCCTGA TGGGCGATCT CGTCGGTCAG
GGAATGGAAG AACAGATTGT GGCGCGTGAC GAAAATTCCT GGCTGGTTGA AGGCGGTACG
CCAATAGAAG ACGTCATGCG GGCGCTGAAT ATTGATGATT TTCCGCACTC CGGCAACTAC
GAAACCATTG GCGGTTTCAT GATGTATACG CTGCGGAAAA TCCCGAAACG TACCGATGCG
GTGCGCTTCT CTGGCTATAA GTTTGAAGTG GTCGATATCG ATAGCTATAA GATCGATCAG
CTGTTGGTGA CGCGTCTGGA AGATCGCCCG ATTGTCTCAT CAAGTGTGAA GATTGATAGC
GACGATTAA
|
|---|
| Protein sequence | MMLNSLLLIL CLIAISAFFS LSEISLAASR KIKLKLMADE GNINADLVLK FQETPGIFFT
VIQIGVNAVA ILAGIIGDAA FSPTFSMLFE RFMSPEAADK VSFICSFVLV TSLFILFGDL
TPKRIGMIAP EAVAVRIINP MRFCLFLFRP LVWIFNGLAN VIFRLLKLPM VRKDDITSDD
IYAVVEAGAL AGVLRKQEHE LIENVFELES RTVPSSMTSR ESVVYFDLRE QEDSIKEKIA
QQPHSKFLVC DGTIDQIVGY VDSKDLLIRV LGNQSLTLSS GVQIRPALIV PDTLTLSEAL
ESFKTAGEDF AVILNEYALV VGIITLNDVM TTLMGDLVGQ GMEEQIVARD ENSWLVEGGT
PIEDVMRALN IDDFPHSGNY ETIGGFMMYT LRKIPKRTDA VRFSGYKFEV VDIDSYKIDQ
LLVTRLEDRP IVSSSVKIDS DD
|
|---|
| |