| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3403 |
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| Symbol | ligA |
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| ID | 8134383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3843800 |
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| End bp | 3845845 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644866704 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_003018955 |
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| Protein GI | 253689765 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGAAAG AACCAGCCGA AGTGAATGTG GTCGCACTGC GGGTAGCGGA GTTGCGCCGG
GTCTTACGCC ATCACGAATA CAAATATCAC GTTGAAGATG CGCCCGAAAT CCCTGATGTC
GAATATGACA AACTCATGCA GGAACTGAAA GCGTTAGAGG CGGATCATCC CGAGCTGGTG
ACCAGCGATT CTCCGACGCA GCGTGTGGGG GCAGCGCCGC TGGCGGCATT CGAACAGGTG
CGCCATGAAG TGCCGATGTT ATCGCTGGAT AACGTCTTTG ATGAAGAGAG CTATTTGGCC
TTCAGCAAGC GAATTGGCGA CAGGCTGAAA AACGGTGACG ATCTGACATT CTGCTGCGAG
CTGAAGCTGG ATGGTTTAGC GGTCAGCCTG TTGTATGAAG ACGGCGTTCT GGTGCAGGCG
GCCACGCGTG GGGATGGCAC GACCGGTGAA AATATCACCA GTAACATTCG CACCGTTGCG
GCAATTCCGT TGCGCCTTGA AGGTGAAAAT ATTCCGCGCC GTGTCGAAGT GCGCGGTGAA
GTGTTTATGA AACACAGCGG TTTTGAAAAG CTGAATGAAG AAGCACGCCG TACGGGGAGC
AAAGTATTTG CCAACCCGCG TAACGCCGCC GCCGGATCGC TGCGTCAGCT CGACCCACGC
ATTACGGCTA AGCGTCCGCT GACCTTTTTC TGCTATGGCG TTGGCTTGCT GGAAGGCGGT
GAACTGCCCG CCAGCCACTG GGAGCGTCTG ATGCAGTTCA AGGCATGGGG GCTGCCGGTT
AGTGACAAAA TTAAGTTATG TACCGGTCCG GCCGAAGTAC TCGACTTTTA TCGTCACGTC
GAACAGACCC GCAGTTCGTT AGGCTTTGAT ATTGACGGCG TCGTTGTCAA AGTTGACTCT
CTGGAGCTGC AGGAACGGTT AGGGTTCGTT GCCCGTGCGC CTCGCTGGGC GGTGGCCTTT
AAATTCCCGG CACAGGAACA GCTGACCTGG GTACGCGATG TTGAGTTTCA GGTTGGGCGG
ACAGGGGCGA TTACACCTGT TGCGCGTCTG GAGCCAGTCG CCGTGGCCGG GGTCATCGTC
AGCAATGCCA CACTGCACAA TGCTGATGAA ATTGAGCGGC TGGGTTTGCA GATTGGCGAT
CGCGTGATTG TTCGTCGAGC GGGGGATGTG ATCCCGCAGA TCGTCGGCAT TGTGGAATCT
GAACGGCCAG AAACGGTGCA GCCGATTGTG TTCCCTTCGG CCTGCCCCGT GTGCGGTTCG
GATGTTGAAC GTGTGGAAGG GGAAGCCGTC ACGCGTTGTA CCGGTGGTTT GATCTGTGGC
GCCCAGCGCA AAGAGGCGCT GAAGCATTTT GTTTCTCGTC GCGCATTGGA TGTGGAAGGC
ATGGGCGATA AGATCATCGA TCAACTGGTG GAAAAAGAGT ACGTCAAGAC GCCAGCCGAT
CTGTTTCGCC TGAGTGCCGG GATCATGACA GGGCTGGATC GCATGGGGCC AAAATCAGCG
ACGAATCTGG TTAATGCGCT GGAAAAAGCG AAAAGCACCA CGCTGGCGCG TTTTCTGTAT
GCGTTGGGGA TCCGCGACGT TGGCGAATCG ACGGCTGCCA ATCTGGCCGC CCATTTTGGT
TCGCTGGAGG CGCTGTTTGC CGCCGATGAA GAGACGCTAC TGGCAGTGCC GGATGTCGGT
AAAGTCGTTG CCGCACACGT GCGTCATTTT CTGGAAGAAG AGCATAACCA AACCGTTATT
CGCGAACTGA CCGATCCCGC AGGCATCAAC ATTCACTGGC CTGAGGTTGT GGTCGTCAAG
GCTGAAGAGA TCGACAGCCC ATTTGCGGGG AAAACGGTGG TATTGACCGG ATCGCTGACT
ATTTTGTCCC GCGACGAAGC CAAAGATCGG CTAACGGCGT TAGGGGCAAA AGTGAGTGGG
AGTGTCTCGA AAAAAACCGA TATGGTGATC GCTGGTGAAG CCGCTGGCTC CAAGCTGGCG
AAGGCTCAGG AACTGGGGAT CCCGGTGATC GATGAGGCGG AAATGATCCG GCTGTTGGGA
GAGTAA
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| Protein sequence | MKKEPAEVNV VALRVAELRR VLRHHEYKYH VEDAPEIPDV EYDKLMQELK ALEADHPELV
TSDSPTQRVG AAPLAAFEQV RHEVPMLSLD NVFDEESYLA FSKRIGDRLK NGDDLTFCCE
LKLDGLAVSL LYEDGVLVQA ATRGDGTTGE NITSNIRTVA AIPLRLEGEN IPRRVEVRGE
VFMKHSGFEK LNEEARRTGS KVFANPRNAA AGSLRQLDPR ITAKRPLTFF CYGVGLLEGG
ELPASHWERL MQFKAWGLPV SDKIKLCTGP AEVLDFYRHV EQTRSSLGFD IDGVVVKVDS
LELQERLGFV ARAPRWAVAF KFPAQEQLTW VRDVEFQVGR TGAITPVARL EPVAVAGVIV
SNATLHNADE IERLGLQIGD RVIVRRAGDV IPQIVGIVES ERPETVQPIV FPSACPVCGS
DVERVEGEAV TRCTGGLICG AQRKEALKHF VSRRALDVEG MGDKIIDQLV EKEYVKTPAD
LFRLSAGIMT GLDRMGPKSA TNLVNALEKA KSTTLARFLY ALGIRDVGES TAANLAAHFG
SLEALFAADE ETLLAVPDVG KVVAAHVRHF LEEEHNQTVI RELTDPAGIN IHWPEVVVVK
AEEIDSPFAG KTVVLTGSLT ILSRDEAKDR LTALGAKVSG SVSKKTDMVI AGEAAGSKLA
KAQELGIPVI DEAEMIRLLG E
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