Gene PC1_3379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3379 
Symbol 
ID8134359 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp3808662 
End bp3809801 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content54% 
IMG OID644866680 
Productglycosyl hydrolase family 88 
Protein accessionYP_003018931 
Protein GI253689741 
COG category[R] General function prediction only 
COG ID[COG4225] Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGTAT TCAGTGTAAA ACATAGCCCG CTTTTACGTC AGCCGGAACG CTTCATCTCC 
CGTGAAGGTC TGAAGGCGCT GATTTGCCGT ATCACCGACA ATCTGGTGAA TATTGAGGAT
AAAACCGGTG AGTTCTTGTT ACGGCTGGAC GATGGTCGGG TGATTGATAC CAAAGGCTGG
GCGGGATGGG AATGGACGCA CGGCATCGGG CTGTACGGGA TTTACCAGTA TTATCAGCAG
ACGGGTGACG AGCAGATGCG TGCCATCATC GACGACTGGT TTACTGAGCG TCTGGCTGAA
GGTACGCCGA CGAAGAACGT GAACACCGTA TGTCCGTTCC TGACGCTGGC TTATCGCTAT
GAAGAAACGG GCGACGCGCG CTGGCGGCCG TATCTGGAGC GCTGGGCGGA GTGGGTGATG
TATGAAATGC CGCGCACGGA CAAGCAGGGT TTGCAGCACA TTGTTTATAA CAATGAAAAC
CACCAGCAGC TGTGGGATGA CACGCTGATG ATGAGCGTGC TGCCGCTGGC GAAAATCGGC
AAGCTGTTAA ACCGGCCGGA GTTTGTGGAA GAAGCCACGT ATCAGTTCTT GCTACACGTG
CAATACCTGA TGGATCGTGA AAGCGGCCTG TGGTTCCACG GCTGGACGTT TGAAGGGCAG
CACAACTATG CCAAAGCGCG CTGGGCCCGA GGTAACAGCT GGCTGACGAT CGTGATTCCT
GAGTTTATCG AACTGCTGGA TCTCCCGGAG CATAACGCGA CACGCCGCTT CCTGTTGCAG
GTGTTGGAAA GCCAGATTGA AGCATTGGCG AAATATCAGG ATGACAGTGG CCTGTGGCAC
ACGCTGATTG ACGATCCAAA CTCGTACCTC GAAAGCTCGG CAACCGCCGG TTTTGCCTAC
GGTATTTTGA AAGCGGTGCG CAAGCGCTAT GTCGATCCGA GCTACGCTGA AGTGGCGGAG
AAAGCGATTC GCGGCGTGAT TAATCACGTT AATGAGGACG GCGAGCTGAC ACAGGTATCA
TTTGGTACTG CGATGGGCAA CGATCTGGAT TTCTACCGCA ACATCGCGCT GACCTCCATG
CCGTACGGCC AGGCAATGGC GATCCTGTGT CTGGCGGAAT ACCTGCGGGT ATATCTGTAA
 
Protein sequence
MTVFSVKHSP LLRQPERFIS REGLKALICR ITDNLVNIED KTGEFLLRLD DGRVIDTKGW 
AGWEWTHGIG LYGIYQYYQQ TGDEQMRAII DDWFTERLAE GTPTKNVNTV CPFLTLAYRY
EETGDARWRP YLERWAEWVM YEMPRTDKQG LQHIVYNNEN HQQLWDDTLM MSVLPLAKIG
KLLNRPEFVE EATYQFLLHV QYLMDRESGL WFHGWTFEGQ HNYAKARWAR GNSWLTIVIP
EFIELLDLPE HNATRRFLLQ VLESQIEALA KYQDDSGLWH TLIDDPNSYL ESSATAGFAY
GILKAVRKRY VDPSYAEVAE KAIRGVINHV NEDGELTQVS FGTAMGNDLD FYRNIALTSM
PYGQAMAILC LAEYLRVYL