| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3371 |
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| Symbol | |
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| ID | 8134351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3801774 |
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| End bp | 3803108 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644866672 |
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| Product | glycoside hydrolase family 28 |
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| Protein accession | YP_003018923 |
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| Protein GI | 253689733 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCACT CTATCCAGTC ATACTCCCCC GCCGCCGACG GCGTCACACC GGATACCGCC
ATTTTTCAGC AGGCTATCGA CAGGATTGCG GCACAGGGCG GCGGCACCTT GACGGTAGAA
CCGGGGCGCT ATCTGTTAGG GGGCTTGCTG CTGCCTTCCA ATTTTTGCCT GCAACTGGAG
GCGGGGGCTG AGCTCATCGT CAGCGGCGAC TATGAGCAGT TTACGCAGGC TACCACCATC
AGCATGGCCG AGCTGTCACA TCGGGCGTTT CTTTATGCTT ACCAACAGCG CAATATCACG
ATCTGCGGTC AGGGTAAGAT CATGGGAAAT GCCGACGCCT ATTTCTCGGT GGAACCCGAC
GCTCAAGGCT ATCGCCTGCC TGCGCAACAT CGCCCACGCA TTGTGGTTTT TGAGGATTGC
GAACACATCC GCCTGTGTGA CTTTACGATT GAACACGCGC CAATGTGGAC CGTGCATTTG
GTCAGCTGTC GTCACGTCAT CGTCGAACGC CTGACGATTG ATAACGATCT GAGCATGGCG
AATACCGATG CGCTGGATCT CGATAGCTGC CAGCAGGTAC AAATCAGCAA CTGCTCGCTG
AGCGCCGCCG ACGATGCACT GTGCATCAAA ACCACCAATA AGCCGCCACA TCTGCAACGT
AAGGTGCAGC AGGTCGTTAT CAGCAATTGC CTGTTGCGCT CCAAGAGCTG TGCGCTGAAG
GTCGGCACCG AAACCTTTGC CGACATTGAA GATATCTCCG TCAGCAACTG TGCCATTTAC
GATACCAACC GCGCGATCGG CCTGATCTCC CGCGATGGTG GCACGTTCCG ACGTTTGCAG
TTCAGCAACA TCACATTCCA GTGTGTCGCC GCACATCCGT GCCACTGGGG CAAAGCCGAT
CCGATCTTTA TCTCCGTACG CTATCGCGAT CCCGCCATCG AACCGGGCCG GATCGAAGCG
GTGCAATTTT CGCAGATCGC GGGGATCAGC GAGGGGGCGA TTAACCTGCA CAGCACGCCC
GCAGGCTACA TTCGTGACAT CCATTTCCAT GCCGTGCACC TCGAACAGCG GCAGAGCGAC
TCGCCGGAAC AGGGCATGTA CGATGTGCGT CCGCCCTGCA ACCCGGAACG CCCTACGGGC
ATGGGGTTAG ACAATGCGTA TCGGGTCGAT CCCATTACCG GGCGCGCATT CGGCGTTGAG
CACTACCCAG GCGGCATGCC CGCATTATTT GCTCGTGGCG TCCTGAACCT GACCACCAGC
CACATGACGA TCCACCGTCC CGATCCGCTC CCTTCAGGCT GGCATCACGC CACGATCGTG
CAGTTGGAAG AATAA
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| Protein sequence | MKHSIQSYSP AADGVTPDTA IFQQAIDRIA AQGGGTLTVE PGRYLLGGLL LPSNFCLQLE
AGAELIVSGD YEQFTQATTI SMAELSHRAF LYAYQQRNIT ICGQGKIMGN ADAYFSVEPD
AQGYRLPAQH RPRIVVFEDC EHIRLCDFTI EHAPMWTVHL VSCRHVIVER LTIDNDLSMA
NTDALDLDSC QQVQISNCSL SAADDALCIK TTNKPPHLQR KVQQVVISNC LLRSKSCALK
VGTETFADIE DISVSNCAIY DTNRAIGLIS RDGGTFRRLQ FSNITFQCVA AHPCHWGKAD
PIFISVRYRD PAIEPGRIEA VQFSQIAGIS EGAINLHSTP AGYIRDIHFH AVHLEQRQSD
SPEQGMYDVR PPCNPERPTG MGLDNAYRVD PITGRAFGVE HYPGGMPALF ARGVLNLTTS
HMTIHRPDPL PSGWHHATIV QLEE
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