Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3356 |
Symbol | |
ID | 8134336 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3783766 |
End bp | 3784530 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644866657 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_003018908 |
Protein GI | 253689718 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGACGGGAT TTCGTTGGGA GATCATTCAG GAGTATGCCC CGCTATTTAT GGAAGGCACC TGGATGACCA TCAAATGCAC CATTATCTGT GTCATTCTTG GCACCTGTTG GGGATTAACG CTCGGGTTAG GCCGCTTAGC GCAAGCACCG CACGGGCCGT GGAAATATAT CCTGCACTAT GGCGTTCAGT GGCCGGTGCG TATCTACATT AGCGCCTTTC GCGGTACGCC GCTGTTTGTA CAAATCATGG TGGTGCACTT CGCGCTGGTG CCGCTATTCA TCAACCCGCG TGACGGGTTG CTGGTAACCA GCAATATTAT GTCGGTCGAT GTTGCCCGCA CGCTACGCGC AGATTACGGC GCGTTCCTCT CCTGCATTGT GGCCATTACG CTGAATGCGG GCGCCTATGT CTCTGAAATA TTCCGCGCCG GTATTCAGTC AATCGATCGC GGCCAGATGG AAGCATCTCG CTCGCTCGGC ATGAGCTATG GCCGCACCAT GCGGAAAGTC ATCCTGCCAC AGGCTTTTCG CCGTATGCTG CCGCCGTTGG GTAACAACGC CATCGCGATT GTGAAAGATT CCTCGCTGGC TTCGGCGATC GGATTGGCGG ATCTCGCCTA TGCCGCTCGC ACGGTATCAG GGGCTTACGC CACGTACTGG GAACCCTATC TGGCGATCTC TATCGTCTAT TGGGTTATTA CTTTCCTGCT CTCGCTGCTG GTGCGGCACA TGGAAACGAG GTTTGGCAAA AGTGATTCAC GTTAA
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Protein sequence | MTGFRWEIIQ EYAPLFMEGT WMTIKCTIIC VILGTCWGLT LGLGRLAQAP HGPWKYILHY GVQWPVRIYI SAFRGTPLFV QIMVVHFALV PLFINPRDGL LVTSNIMSVD VARTLRADYG AFLSCIVAIT LNAGAYVSEI FRAGIQSIDR GQMEASRSLG MSYGRTMRKV ILPQAFRRML PPLGNNAIAI VKDSSLASAI GLADLAYAAR TVSGAYATYW EPYLAISIVY WVITFLLSLL VRHMETRFGK SDSR
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