| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3353 |
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| Symbol | ispD |
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| ID | 8134333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3781456 |
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| End bp | 3782169 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644866654 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_003018905 |
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| Protein GI | 253689715 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGACTC CTAGCCTTTC CCCGCCTGAT ATTGTTGCCG TTTTGCCCGC CGCGGGTAAC
GGCAGCAGAA TGCAAAACGA TCGTCCTAAG CAGTATCTGA CGATTGGTAA TGATGCAACC
GGTCATAAAA CCATTCTTGA ACATACTATC GACGCGCTTT TACGCCATTC ACGCGTGCGG
CGTGTCGTCG TCGTTATCAG TCCCGATGAC GCATTTTTTC ATACTCTGGC GATCGCCAGC
GATCCCCGTA TTTGCACCGT AACGGGCGGG CGGCAGCGTG CCGATTCCGT GCTGGCAGGG
CTATCCGCCG TTGCCGACGG CGCGTGGGCG CTGGTGCATG ACGCGGCGCG TCCGTGTTTG
CATCAGGACG ATCTGACGCG CCTGCTGGCG ATTGTTGAGC AGAGTGACGT TGGTGGAATT
TTGGCCGCCC CGGTTCGTGA TACCATGAAG CGCAGCACGG ATGGGTTTAT CGATCGCACG
GTAGAACGTA ACGATTTGTG GCATGCGCTG ACGCCGCAGC TTTTTCCCGC GGCACTGTTG
AAACAGTGCC TGCAACGGGC ACTTCAGGAT GGCGTAGCCG TCACAGATGA AGCCTCCGCG
CTGGAATATT GTGGCTATCG CCCGCAAATT ATCAGCGGGC GGGCGGATAA TATCAAAGTC
ACGCGCCCAG AGGATTTGGC ATTAGCTGAA TTCTATTTAA CCAGTTTGCA GTAA
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| Protein sequence | MQTPSLSPPD IVAVLPAAGN GSRMQNDRPK QYLTIGNDAT GHKTILEHTI DALLRHSRVR
RVVVVISPDD AFFHTLAIAS DPRICTVTGG RQRADSVLAG LSAVADGAWA LVHDAARPCL
HQDDLTRLLA IVEQSDVGGI LAAPVRDTMK RSTDGFIDRT VERNDLWHAL TPQLFPAALL
KQCLQRALQD GVAVTDEASA LEYCGYRPQI ISGRADNIKV TRPEDLALAE FYLTSLQ
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