| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3351 |
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| Symbol | truD |
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| ID | 8134331 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3779743 |
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| End bp | 3780789 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644866652 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_003018903 |
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| Protein GI | 253689713 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAATA GCGAACAACT CGTCTGGCTG CATGGCGAAC CACAGGCTAC CGGCTCATTG
AAGTCCGCTG CGGAAGATTT TGTCGTCGTC GAAGATCTGG GGTTCCAGCC AGACGGTGAT
GGTGAACAGG TATTAGTGCG CGTACGTAAG CGCGGCTGCA ATACGCAATT TGTGGCTGAA
ATGCTGGCGA AATTCGCTCG CCTGCCGCTA CGAGCCGTAA GCTATGCAGG TCTGAAAGAT
CGTCATGCTG TCACCGAACA GTGGTTTTGT CTGCATATGC CGGGCAAGGA CACGCCGGAT
TTCTCTACGC TGGCGCTTGA AGGCTGTGAT GTGCTTGAAG TGACCCGCCA TCGTCGCAAG
TTGCGCATTG GTACGCTGCG AGGTAACCAT TTTACTCTGG TGCTGCGTCA GGTCAGTGAT
CGACGCGAGG TTGATGCTCG TTTGGTACTG ATTGCCGCGA ACGGCGTCCC TAATTATTTC
GGTAGCCAGC GTTTCGGGCG CAACGGAAAT AATCTTGAGC AGGCGCGTCT TTGGGCGAAT
AACGAGATTC GGGTAAAAGA ACGTAATAAA CGTAGTTTTT ATCTTTCCGC CAGCCGCAGT
GCGATGTTTA ATCAGGTTGT TAGCGCAAGA CTGGCGGGAG AGCAGGCGAA AACCGTTTTA
TGTGGCGACG CATTGCAGCT AACAGGGCGC GGCAGCTGGT TTGTGGCTAA ACCTGACGAA
CTGGAAACCT TACAGGCGCG CCTTGATGCC GGCGAGCTCC AGATTACTGC GCCGTTGCCC
GGTGACGGTG AGCTGGGTAC GCAGGATGAT GCACGAGCAT TTGAAGAGCT GGCTTTAACG
GGACAAGAGA CGCTGTGGTC TTTGGTCAAG CGCGAGCGGG TTGAATCGGC GCGGCGCGCG
GTACTGTTGT ATCCGCAACA GATGTGCTGG GAATGGCAGG ATGACACGGC CGTGGAAGTG
AAATTTTGGC TACCTGCGGG TAGTTTTGCG ACCAGCGTGG TACGTGAATT GTTGCAGTCA
TTCCAGGATG CTGATATCGG TGTCTGA
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| Protein sequence | MENSEQLVWL HGEPQATGSL KSAAEDFVVV EDLGFQPDGD GEQVLVRVRK RGCNTQFVAE
MLAKFARLPL RAVSYAGLKD RHAVTEQWFC LHMPGKDTPD FSTLALEGCD VLEVTRHRRK
LRIGTLRGNH FTLVLRQVSD RREVDARLVL IAANGVPNYF GSQRFGRNGN NLEQARLWAN
NEIRVKERNK RSFYLSASRS AMFNQVVSAR LAGEQAKTVL CGDALQLTGR GSWFVAKPDE
LETLQARLDA GELQITAPLP GDGELGTQDD ARAFEELALT GQETLWSLVK RERVESARRA
VLLYPQQMCW EWQDDTAVEV KFWLPAGSFA TSVVRELLQS FQDADIGV
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