| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3348 |
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| Symbol | |
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| ID | 8134328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3776423 |
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| End bp | 3777415 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644866649 |
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| Product | RNA polymerase sigma factor RpoS |
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| Protein accession | YP_003018900 |
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| Protein GI | 253689710 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0152271 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAAA GTACGCTGAA AGTTAACGAG TTACATGAAG ATACCGATTT CGACGAAAAT
GGACTTGACG TTTTTGACGA TAAAGCGCTG GCAGAGGAAG ATACCAATGA TAATGATTCG
GCGGAAGACG AGCTGTTATC ACAAGGGGTC CCACAGCGTG TCCTGGACGC AACACAGCTT
TATTTAGGAG AAATCGGTTA TTCGCCGCTT TTGACCGCAG AAGAAGAAGT TTATTTTGCC
CGGCGTGCGC TGCGTGGTGA TGTCCCATCG CGCCGCCGGA TGATTGAGAG TAACCTGCGG
TTGGTGGTGA AAATTGCCCG CCGTTACAAC AATCGTGGTC TGGCCTTGCT GGATCTGATT
GAAGAGGGGA ACCTCGGCCT GATCCGTGCG GTTGAAAAAT TCGATCCAGA AAGAGGATTC
CGTTTTTCAA CCTACGCAAC CTGGTGGATT CGACAGACGA TAGAACGGGC GATCATGAAT
CAAACCCGTA CCATCCGTTT GCCGATTCAC ATCGTCAAAG AACTCAACGT TTATCTGCGC
ACCGCGCGCG AACTGTCTCA TAAACTGGAT CACGAGCCGA GTGCGGAAGA AATTGCCGAA
CAGCTTGATA AGCCTGTTGA TGACGTCAAC CGCATGCTGC GCCTGAATGA ACGTATAACT
TCTGTCGATA CTCCGCTGGG CGGTGATTCG GAAAAAGCGC TGCTGGATAT TCTGGCAGAC
GAAAAAGACA ACGGACCTGA AGACACCACT CAGGATAACG ATATGAAACA GAATATCGTT
AAATGGTTGT TTGAGCTTAA TGCCAAACAG CGTGAGGTGC TGGCGCGTCG TTTCGGCCTG
TTAGGGTATG AAGCGGCTAC GCTGGAAGAT GTCGGTCGTG AAATTGGCTT AACACGTGAA
CGTGTTCGTC AGATTCAGGT TGAAGGCTTG CGCCGCCTGC GGGAGATTTT GCAGGTTCAG
GGGCTGAGCA TTGAAGAACT GTTTCGTGAA TAA
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| Protein sequence | MSQSTLKVNE LHEDTDFDEN GLDVFDDKAL AEEDTNDNDS AEDELLSQGV PQRVLDATQL
YLGEIGYSPL LTAEEEVYFA RRALRGDVPS RRRMIESNLR LVVKIARRYN NRGLALLDLI
EEGNLGLIRA VEKFDPERGF RFSTYATWWI RQTIERAIMN QTRTIRLPIH IVKELNVYLR
TARELSHKLD HEPSAEEIAE QLDKPVDDVN RMLRLNERIT SVDTPLGGDS EKALLDILAD
EKDNGPEDTT QDNDMKQNIV KWLFELNAKQ REVLARRFGL LGYEAATLED VGREIGLTRE
RVRQIQVEGL RRLREILQVQ GLSIEELFRE
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