| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3346 |
|---|
| Symbol | |
|---|
| ID | 8134326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3773736 |
|---|
| End bp | 3774452 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644866647 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003018898 |
|---|
| Protein GI | 253689708 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1720] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00104] probable methyltransferase, YaeB/AF_0241 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00404428 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAT TTGTTTTCAA TCAGATCGGG ATTATCCGCT CACCGTATAA AGAAAAATTT
GCCATTCCGC GGCAGCCGGG TCTGATTGAA GATGGAGGCG GAGAACTTCA GTTATTGCCG
CCGTACAATC AGGCTGAGTG TGTTCGAGGG CTGGAGGCGT TCAGCCATAT CTGGGTATTG
TTCATTTTTC ATCAAACGAT GGAAGGTGGC TGGCGTCCGA CTGTTCGACC ACCGCGTCTG
GGCGGAAATG CACGTACGGG TGTTTTCGCT ACGCGTTCTA CTTTCCGCCC CAACCCTGTT
GGCATGTCGC TGGTTGAATT AAAAGGGATT CGAGTAAAAG GCGATGCCAT TACGCTCGAA
TTAGGCAGCC TTGATCTGGT CGATGGTACA CCGGTTGTCG ATATCAAACC TTACCTGCCT
TTTGCAGAGA GCCATCCTCA GGCACGAGCG GGTTTTGCCC AAATGGCGCC CGATGCCGCA
ATGCCAGTGC TTTTTTCTCC CCTTGCGGAA AATCAGATCG CACAACACCA AAAGAAATAT
CCCCAGCTAA AGCGCTTTAT CACACAGGTA TTGGCGCAAG ATCCACGCCC GGCCTATCGC
AAAGGAGAAA GCACTACGCG TGAATACGCC GTTTTGCTGC TGGAATTCAA TGTACGCTGG
CGCGTCTGCG AAGAACAAAC CGAAGTGTTA AGCCTCGCCC CGTCAAACGC GTGTTAA
|
|---|
| Protein sequence | MSQFVFNQIG IIRSPYKEKF AIPRQPGLIE DGGGELQLLP PYNQAECVRG LEAFSHIWVL
FIFHQTMEGG WRPTVRPPRL GGNARTGVFA TRSTFRPNPV GMSLVELKGI RVKGDAITLE
LGSLDLVDGT PVVDIKPYLP FAESHPQARA GFAQMAPDAA MPVLFSPLAE NQIAQHQKKY
PQLKRFITQV LAQDPRPAYR KGESTTREYA VLLLEFNVRW RVCEEQTEVL SLAPSNAC
|
|---|
| |