| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3340 |
|---|
| Symbol | |
|---|
| ID | 8134313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3762507 |
|---|
| End bp | 3763787 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644866634 |
|---|
| Product | alpha-ketoglutarate transporter |
|---|
| Protein accession | YP_003018892 |
|---|
| Protein GI | 253689702 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0684636 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATC TAACGGAAAA TGCGAAAGAT ACGCGCCAGC GTATCCGGGC TATAGTTGGC
GCTTCATCGG GCAATTTGGT TGAGTGGTTT GATTTTTATG TGTATTCCTT TTGCTCAATC
TATTTCGCCC ATATCTTTTT TCCTTCGGGA AATACCACCA CTCAATTACT ACAAACAGCA
GGGGTTTTTG CAGCAGGCTT TTTAATGAGA CCGATTGGCG GTTGGCTTTT CGGTTACATT
GCTGACAAGC ATGGTCGTAA AAATTCAATG CTAATTTCGG TTTGCATGAT GTGCTTTGGA
TCTCTGGTTA TTGCATGTTT GCCGGGATAT GAAACTATTG GCACCTGGGC TCCATTTTTG
CTGCTATTAG CTCGTTTATT TCAGGGGCTT TCTGTCGGTG GGGAATACGG TACCAGTGCA
ACGTATATGA GTGAGGTTGC CGTTGAGGGA AGAAAGGGAT TCTATGCCTC CTTTCAATAT
GTCACGCTGA TTGGTGGTCA ACTGCTGGCG CTATTAGTCG TTGTGATATT GCAGCAGATT
CTGAGTGATG ACGATTTACA TGCCTGGGGA TGGCGTATTC CTTTTGCTCT CGGTGCTATC
TTGGCGATTG TTGCACTTTA TTTACGCCGC TCTCTGAATG AAACGTCTGA TAAATCAACC
CGCGAACATA AAGATGCCGG TTCGCTTGCT GGGTTGTGGA AACACCGCCG CGCTTTTATT
ACCGTACTGG GCTTTACGGC CGGTGGTTCC TTAGCCTTTT ATACGTTTAC CACTTACATG
CAAAAATATT TGGTGAATAC GGCAGGAATG CATGCGAAAA CCGCGAGCGG GTTAATGACC
CTCGCACTAT TTATTTTTAT GCTGCTGCAG CCGTTTTTTG GTGCGTTGTC GGATAAGATT
GGCCGTCGCA GCTCAATGCT TTGTTTCGGC GGACTTGCGG CACTGCTGAC GGTTCCCATT
CTGACGGTAC TACAAAGTGT GACGAGCCCT GTTATTGCCT TCTCGTTGGT GATGCTTTCA
CTGATTATTG TCAGTTTCTA CACCTCCATT AGCGGTATTT TAAAAGCAGA AATGTTTCCG
CCTGAAGTTC GTGCGTTAGG TGTTGGGTTA TCTTATGCCG TGGCTAATGC ATTGTTTGGT
GGTTCGGCGG AGTATGTTGC GCTTTCGCTG AAATCCTTTG GCATGGAAAC GACGTTCTTC
TGGTATGTCT CGGCTATGGG GGCGATTGCG TTTATTGTGT CATTAACGCT GCATCGTAAA
GGCAGAGGGA TGAAGCTTTA G
|
|---|
| Protein sequence | MTDLTENAKD TRQRIRAIVG ASSGNLVEWF DFYVYSFCSI YFAHIFFPSG NTTTQLLQTA
GVFAAGFLMR PIGGWLFGYI ADKHGRKNSM LISVCMMCFG SLVIACLPGY ETIGTWAPFL
LLLARLFQGL SVGGEYGTSA TYMSEVAVEG RKGFYASFQY VTLIGGQLLA LLVVVILQQI
LSDDDLHAWG WRIPFALGAI LAIVALYLRR SLNETSDKST REHKDAGSLA GLWKHRRAFI
TVLGFTAGGS LAFYTFTTYM QKYLVNTAGM HAKTASGLMT LALFIFMLLQ PFFGALSDKI
GRRSSMLCFG GLAALLTVPI LTVLQSVTSP VIAFSLVMLS LIIVSFYTSI SGILKAEMFP
PEVRALGVGL SYAVANALFG GSAEYVALSL KSFGMETTFF WYVSAMGAIA FIVSLTLHRK
GRGMKL
|
|---|
| |