| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3331 |
|---|
| Symbol | |
|---|
| ID | 8134304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3751560 |
|---|
| End bp | 3753095 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644866625 |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_003018883 |
|---|
| Protein GI | 253689693 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0816524 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAGAGAG AACCGCTTAA AGGTGCCAGT CTGGCCTGGA TGACCGTTGC TCTGTCGCTG
GCAACGTTTA TGCAGGTGCT GGATTCCACC ATCGCCAACG TCGCTATTCC GACCATCGCC
GGTAATCTGG GTGCGTCTAA CTCGCAGGGA ACATGGGTCA TTACCTCGTT TGGGGTCGCT
AACGCCATCT CTATCCCTAT CACAGGCTGG CTAGCCAAAC GGTTTGGTGA AGTCCGCCTG
TTTCTGTGGT CAACGGCGCT CTTCGCCCTG ACGTCCTGGC TGTGTGGTGT GTCCACCAGC
CTGGAAATGC TGATTTTCGC CCGTGTGTTG CAGGGGATTG TCGCCGGGCC GTTGATCCCG
CTGTCACAGA GTCTGTTGCT CAGTAACTAT CCCCCCGCGA AGCGCAGCAT CGCCCTGGCA
CTGTGGTCAA TGACCGTGGT CGTCGCACCG ATCTGTGGCC CGATTCTGGG CGGCTGGATT
AGCGACAACT ATCACTGGGG CTGGATATTC TTCATCAACG TCCCGCTGGG CATCGCCGTG
GTGTTTATTG CTATGCAAAC GCTGCGTGGG CGAGAAACCA AAACCGAGAT CAAGCCCATC
GATACTATCG GGCTGGCCCT GTTGATCGTC GGTATCGGTA GCCTGCAGAT GATGCTCGAT
CGGGGAAAAG AGCTGGATTG GTTTAACTCG ACGGAAATTA TCACCCTGAC CGTGGTGGCC
GTGGTCGCGA TAACGTTCCT GATTGTCTGG GAACTCACGG ACGATCACCC AGTGGTGGAT
TTGTCGCTGT TTAAGTCGCG CAACTTCACT ATTGGCTGCC TGTGTATCAG CCTCGCCTAT
ATGTTCTACT TCGGGGCGAT CGTGCTCTTG CCGCAGCTGT TGCAGGAGGT GTATGGCTAT
ACCGCCACCT GGGCTGGTCT GGCGTCCGCC CCCGTTGGGC TGATGCCAGT CGTGCTGTCA
CCGATTATCG GTCGATTCGC GCCGCGTCTG GACATGCGCA AGCTGGTGAC GTTCAGCTTT
ATTATGTATG CCGTCTGTTT TTACTGGCGT GCGTACACTT TCGAGCCGGG CATGGATTTC
GGCGCATCGG CCTGGCCGCA GTTCGTTCAG GGGTTTGCCG TAGCCTGCTT CTTCATGCCA
CTGACAACCA TTACGCTCTC CGGGCTTCCG CCGGAACGGC TGGCCGCAGC GTCGAGCCTG
TCCAACTTTA CCCGAACGCT GGCGGGATCG ATCGGGACGT CGATAACCAC TACGCTCTGG
ACACAGCGCG AATCGCTGCA TCATGCACAC CTAACGGAAT CGATCACACC TTATAACCCG
ATCGCGCAGG AAACATACCA ACAGCTTCAG GCGATGGGAA TGAACCAAAC ACAGGCCTCG
GCCTACATCG CAGAACAGAT TACTGCACAG GGGCTGATTA TCTCCGCCAA CGAGATTTTC
TGGGCCGCCG CAGCCGTATT CCTGATACTG CTGGTGCTGG TCTGGTTCGC TAAACCACCC
TTTACTACCG GCGGTGGAGG CGGTGGCGCG CACTAG
|
|---|
| Protein sequence | MQREPLKGAS LAWMTVALSL ATFMQVLDST IANVAIPTIA GNLGASNSQG TWVITSFGVA
NAISIPITGW LAKRFGEVRL FLWSTALFAL TSWLCGVSTS LEMLIFARVL QGIVAGPLIP
LSQSLLLSNY PPAKRSIALA LWSMTVVVAP ICGPILGGWI SDNYHWGWIF FINVPLGIAV
VFIAMQTLRG RETKTEIKPI DTIGLALLIV GIGSLQMMLD RGKELDWFNS TEIITLTVVA
VVAITFLIVW ELTDDHPVVD LSLFKSRNFT IGCLCISLAY MFYFGAIVLL PQLLQEVYGY
TATWAGLASA PVGLMPVVLS PIIGRFAPRL DMRKLVTFSF IMYAVCFYWR AYTFEPGMDF
GASAWPQFVQ GFAVACFFMP LTTITLSGLP PERLAAASSL SNFTRTLAGS IGTSITTTLW
TQRESLHHAH LTESITPYNP IAQETYQQLQ AMGMNQTQAS AYIAEQITAQ GLIISANEIF
WAAAAVFLIL LVLVWFAKPP FTTGGGGGGA H
|
|---|
| |