| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3322 |
|---|
| Symbol | proX |
|---|
| ID | 8134295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3742769 |
|---|
| End bp | 3743776 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644866616 |
|---|
| Product | glycine betaine transporter periplasmic subunit |
|---|
| Protein accession | YP_003018874 |
|---|
| Protein GI | 253689684 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGTA ACACCACACT TTGGGCTGCC GCCCTGACGA CCACACTGTT GAGTACACAA
GTTTACGCCG CTGACACCGC GCAACCTGGG AAAGGCATTT CCGTTATTCC GGTGCAAAGC
ACTATCTCCG AGGAGACGTT CCAGACGCTG CTGGTCAGCC GCGCGTTGGA AAAGCTGGGC
TATGACGTAC AACCCCCACG TGAAGTGGAC TATAACGTGG CCTACACTTC AATCGCCTCC
GGCGATGCGA CATTTATTGC CGTAAACTGG GATCCGCTAC ACGCCGACCA GTATAAAGCC
GCAGGCGGGG ACGCGAAGTT CTACCGTCAG GGTGAATATG TCTCCGGTGC TGCTCAGGGC
TACCTGATCG ATAAAAAAAC GGCTGAAAAA TACAAAATCA CCAATATTGC ACAGTTAAAA
GATCCGAAAA TCGCCAAGCT GTTTGATACC AACGGCGACG GCAAAGCCGA TCTGACGGGC
TGTACGCCGG GCTGGGGATG TGAAGCGGCC ATCAACCATC ACCTTCCTGC CTATGGCTTA
ACCAACACGG TAGAGCATAA CCAAGGTAAC TATGCGGCGA TGATCGCCGA CACCATCACC
CGTTATAAAG AAGGTAAGCC GATTCTGTAC TACACCTGGA CGCCGTACTG GGTGAGTGAT
GTGCTGGTGC CGGGACGGGA CGTGGTCTGG TTGCAGGTTC CTTTCTCTTC CCAACCGGGA
GAAATGAAGG GCGTCAGCAC CAAACTGCCC AACGGGGCCG ACTACGGCTT CCCGGTTAAC
AACATGAGAA TTGCCGCGAA TAAGGAATGG GCAGAGAAAA ACCCGGCGGC GGCGAAGCTG
TTCGCCATCA TGAAACTGCC GATTGCCGAC GTGAATGCGC AGAACCTGCG TATGCATGAA
GGTCAGGGTT CACAGCAGGA TATCGAACGT CATGTTGATG GCTGGATCAA AGCTCACCAA
CAGCTGTTTG ATGGCTGGGT GAAAACCGCC GCTGACGCCG CGAAATAA
|
|---|
| Protein sequence | MMRNTTLWAA ALTTTLLSTQ VYAADTAQPG KGISVIPVQS TISEETFQTL LVSRALEKLG
YDVQPPREVD YNVAYTSIAS GDATFIAVNW DPLHADQYKA AGGDAKFYRQ GEYVSGAAQG
YLIDKKTAEK YKITNIAQLK DPKIAKLFDT NGDGKADLTG CTPGWGCEAA INHHLPAYGL
TNTVEHNQGN YAAMIADTIT RYKEGKPILY YTWTPYWVSD VLVPGRDVVW LQVPFSSQPG
EMKGVSTKLP NGADYGFPVN NMRIAANKEW AEKNPAAAKL FAIMKLPIAD VNAQNLRMHE
GQGSQQDIER HVDGWIKAHQ QLFDGWVKTA ADAAK
|
|---|
| |