| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3320 |
|---|
| Symbol | |
|---|
| ID | 8134293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3740071 |
|---|
| End bp | 3741273 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644866614 |
|---|
| Product | glycine betaine/L-proline ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_003018872 |
|---|
| Protein GI | 253689682 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4175] ABC-type proline/glycine betaine transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATTA AACTTGAAGT AAAGAATCTT TATAAGATAT TTGGCGAGCA CCCAGACAGA
GCATTTAAAC TGATTGATAA AGGCCTGAGC AAAGATCAGG TATTTGAAAA AACAGGGCTT
ACTGTTGGGG TAAAAGATGC CAGTCTGGCC ATTGAAGAAG GCGAGATATT TGTCATCATG
GGATTATCCG GCTCCGGCAA ATCCACCATG GTACGCCTTC TCAATCGTCT GATAGAACCC
ACTCGGGGTC AGGTGCTGAT CGACGGTGAG GATATTTCCC AGATATCCGA TACCGCGCTG
CGCGACGTGC GCCGCAAAAA GATCAGTATG GTGTTCCAGT CCTTTGCGCT GATGCCACAC
CTGAACATTC TCAGCAATAC CGCGTTTGGT ATGGAACTCG CTGGCGTGCC GAAAGCGGAA
CGTGAGCAAA AAGCGCTGGA TGCATTGCAG CAGGTCGGCC TTGAAGCCTA CGCCGCGTCT
TACCCGGATG AGTTATCCGG CGGGATGCGA CAACGTGTCG GTCTGGCTCG CGCCCTGGCG
AACGACCCTG ATATCCTGCT GATGGATGAG GCGTTCTCCG CACTCGATCC ACTGATCCGT
ACTGAAATGC AGGATGAGCT GATCAAACTC CAGTCCCGTC ATCAACGCAC TATCGTCTTT
ATCTCGCACG ATCTGGATGA AGCGATGCGC ATCGGTGACC GGATTGCCAT CATGCACGGC
GGTGAAGTGA TTCAGGTCGG TACGCCCGAT GAAATCCTGA ATAACCCGGC CAATGACTAT
GTGCGCACCT TTTTCCGCGG TGTCGATATC AGCCACGTGT TTAGCGCCAA AGATATCGCC
CGTCGTCGTC CGGTCACCCT AATCCGTAAA ACACCCGGTG TAGGCCCGCG TTCCGCGCTG
AAAATCCTTC AGGACGAAGA CCGTGATTAC GGTTACGTAC TGGAAGGCGG AAAACGCTTC
ATTGGCGTCG TGTCGATTGA TTCACTGAAG CAGGCGCTGA AAGAACAGCA GCCGCTGGAA
CAGGCGTTAC TGCCCGAACC TGTTCCCGTG CCCGCAGATA TGTCACTCAA CGAGCTGATT
TCTCAGGTCG CACAGGCTCC CTGTGCCGTT CCTGTCGTCG GCGAAAACCA TGAGTACATT
GGCATCATTT CCAAAGGGAT GTTGCTACAG GCACTGGATA AGGAAGGAGT GACCAATGAG
TAA
|
|---|
| Protein sequence | MAIKLEVKNL YKIFGEHPDR AFKLIDKGLS KDQVFEKTGL TVGVKDASLA IEEGEIFVIM
GLSGSGKSTM VRLLNRLIEP TRGQVLIDGE DISQISDTAL RDVRRKKISM VFQSFALMPH
LNILSNTAFG MELAGVPKAE REQKALDALQ QVGLEAYAAS YPDELSGGMR QRVGLARALA
NDPDILLMDE AFSALDPLIR TEMQDELIKL QSRHQRTIVF ISHDLDEAMR IGDRIAIMHG
GEVIQVGTPD EILNNPANDY VRTFFRGVDI SHVFSAKDIA RRRPVTLIRK TPGVGPRSAL
KILQDEDRDY GYVLEGGKRF IGVVSIDSLK QALKEQQPLE QALLPEPVPV PADMSLNELI
SQVAQAPCAV PVVGENHEYI GIISKGMLLQ ALDKEGVTNE
|
|---|
| |