| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3296 |
|---|
| Symbol | gmhA |
|---|
| ID | 8134269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3713501 |
|---|
| End bp | 3714082 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644866590 |
|---|
| Product | phosphoheptose isomerase |
|---|
| Protein accession | YP_003018848 |
|---|
| Protein GI | 253689658 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0279] Phosphoheptose isomerase |
|---|
| TIGRFAM ID | [TIGR00441] phosphoheptose isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCAGG ATTTAATCCG TAGTGAACTG AAAGAAGCGG CGGAAACACT GAATAATTTC
TTGAGTGATG ATGCGAACAT TCAGTCGATT CAAAACGCTG CGGTGCTGTT GGCTAACGCT
TTTAAAGCGG GTGGTAAAGT GATCTCCTGT GGTAACGGTG GTTCACACTG TGACGCTATG
CACTTTGCCG AAGAGCTGAC GGGGCGTTAT CGCGAGAACC GTCCTGGCTA TCCGGCCATT
GCGATTTCCG ATCCGAGCCA CCTGTCCTGC GTCAGCAATG ACTTTGGCTA TGACTTTGTA
TTCTCGCGCT ATGTCGAATC ACTGGGGCGT GAAGGCGATG TGCTGCTGGG TATTTCCACG
TCTGGTAACT CCGGCAACAT TATTAAAGCG ATTGCCGCAG CAAAAGCGAA AGGCATGAAA
GTCATTACGC TGACCGGGAA AGACGGCGGC AAAATGGCGG GTTCAGCCGA TGTGGAAATT
CGTGTTCCGC ACTTCGGTTA TGCCGACCGC ATTCAGGAAA TCCATATCAA AGCGATCCAC
ATCCTGATTC AACTGATTGA AAAAGAGATG GCGGATCAGT AA
|
|---|
| Protein sequence | MYQDLIRSEL KEAAETLNNF LSDDANIQSI QNAAVLLANA FKAGGKVISC GNGGSHCDAM
HFAEELTGRY RENRPGYPAI AISDPSHLSC VSNDFGYDFV FSRYVESLGR EGDVLLGIST
SGNSGNIIKA IAAAKAKGMK VITLTGKDGG KMAGSADVEI RVPHFGYADR IQEIHIKAIH
ILIQLIEKEM ADQ
|
|---|
| |