| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3269 |
|---|
| Symbol | |
|---|
| ID | 8134241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3686089 |
|---|
| End bp | 3688416 |
|---|
| Gene Length | 2328 bp |
|---|
| Protein Length | 775 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644866564 |
|---|
| Product | P4 family phage/plasmid primase |
|---|
| Protein accession | YP_003018823 |
|---|
| Protein GI | 253689633 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3378] Predicted ATPase |
|---|
| TIGRFAM ID | [TIGR01613] phage/plasmid primase, P4 family, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.592172 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACACC TTACCGTGAC ACAGACTGTG AAACGCGCCA GCGGCCACTG GCCGCAACTG
CTCCCGGCAG TGGGTATCCG GATTGATGCC ACCGGGCAGC ATACCGCCTG CCCGATGTGT
GAGGGCAAAG ACCGTTTTCG CTTCGATAAC AAAGAAGGGC GTGGCACATG GATTTGTAAC
CAGTGCGGCG CGGGTGACGG CTTGAATCTG GTGGAAAAAA CCCTGAAACT GACGCCGACA
GAAGCCGCCC TGACAGTGGG CGCGTGGCTG GGTGACCTGC CGGACAGCCC GGCAGCGTCA
ACACAAGATG AAGAAGACAG CGAGGCCGCC CGGCAACGGG CGGCAGTTCA GGCACAGGCA
AAGCTGAAAG AAGCTGTGAC ACAACCCGGT AACGCATATC TCTGTGCCAA AGGCTGGCCG
GATATCGCGG TGCCGACCCT ACAGGGTAAG CCGCTGCGCG TGGGCGGTAT CACCTATCAG
CCCGGCGATG TACTGGTGCC GCTGACCACA CCGGACGGTG AGGTGGTGAA TCTCCAGCTT
ATCAACGCAC AGGGCGACAA GCGCACGTTA AAAGGCGGAC AGGTGAAAGG TGCCTTTCAC
TGTTTCAGCG GCAAACAGGC CAGTGTTATC TGGCTGGCCG AAGGCTATGC CACCGGCTTA
ACGCTGCATC AGTTAACCGG TGATGCGGTG TATGTCGCGC TCAGCGCGAA CAACCTGCCG
TCCCTTGCCC GTGAGCTGAA AACCCGCCAC CCTTCGGCCA CGCTGCTGAT AGCCGCTGAC
CGGGACGAGA ACGGCACCGG CCAGACCAAA GCCGAACAGG CCGCCGTTGC CGTCAATGGC
CGTGTCGCGC TGCCGCCGGT GTTTGGTGAC TGGAATGATG TGTATCTTGC TGAGGGTGCC
GACGCCACCC GGCAGCACCT GAATGCGTTT ACCCAACCAG AGCCTGTCAG CCCGTTTGAG
TCGCTGGGCG AGGCCGAATT CAAGGCCATG AGCGCCAGCG AGAAAGCGGA GAAGATACGC
GAACACTACC GCGACACGCT GGCAATTGAT GCGTTCGGGG AAACGTTCTT CCAGTATCAG
AACGGCGCAT GGAAAGTCCT TCCCCATCGT CTGTTAAGCC GGGATATCGC CGCGCTGTTT
CAGAAGATAC AGGCACCCTT TACCGCAGCG GGTATAGACA GTGTGATAAA CACCCTGAAA
CTGATTGTTC CGATGCAGGA AGCCTCCCAG CGCCGGTTAA TCGGCTTTCG TAACGGCGTG
TTTGATACCG CCAGCGGTGA ATTTAAACCG CATCGCCGGG AGCACTGGTT ACATACCGTC
AATGACGTGG ATTACACCCC GTTTAAGGCC GGGGAAAACC TTGCCGACAA TGCGCCGCAC
TTCTGGCGCT GGCTGACCCG TGCCGCCGGG AACCACCCGG ATAAACAGGA GCGTATTCTG
GCCGCGCTGT TTATGGTGCT GGCGAACTGC TATGACTGGC AACTGTTCCT TGAAGTCACC
GGCCCCGGCG GCAGCGGAAA GAGTATTCTG GCGGAAATTA CCACTATGCT GGCCGGGGAC
GATAACACCA CAGCGGCAAC CATCAACACC ATTGAATCGT CCCGTGAGCG TTCGTCGATT
ATTGGCTTCT CACTCATCGT ACTGCCGGAT CAAGAGAAAT GGAGCGGTGA CGGCGCAGGT
ATCAAGGCCA TTACCGGCGG CGATGCGGTG ATGGTTGACC CGAAATACCG TGACGCCTAT
TCCACCCGTA TTCCGGCGGT GATTCTGGCC GTCAACAACT CGCCGATGCG TTTTAGCGAC
CGCAGCGGCG GCGTATCCCG TCGTCGAGTG ATTATCCATT TTGGTGAAAC CATCCCAGCC
AGCGAACGCG ATCCCAAGCT GAAAGAGAAA ATCCGCGCAG AGCTGGCGGT GATAGTGCGT
CACCTGATGA AACGCTTTGA AGAGCCAAAC GACGCCCGGA CGCTGTTACA GGCGCAGCAA
CACTCCGCTG AGGCGCTGGA AATCAAACGG CAGGCTGATC CGCTGGTTGA TTTTTGCGGC
TACCTGCTGG CTCACAGCGA CACCACCGGG CTGTATATGG GCAACGCCAA CATCACACCG
CGTAACCCGC GTAAGTACCT GTACCACGCC TATCTGTCCT TTATGGAATC GCACGGCCAC
CAGAAGCCGA TCAGCCTGAC GGCCTTTGGT AAGGTACTGC CTAACATGAT GTCGGAATAC
GGGCAGAGTT ACCTCAAGGG CAGAACCAAG CAGGGCATAC AGACTAACCT TGAGCTGAAA
GACGAATCAG ACGCCGACTG GCTGCCTAAA TGCGAATCGG CGAGGTAG
|
|---|
| Protein sequence | MAHLTVTQTV KRASGHWPQL LPAVGIRIDA TGQHTACPMC EGKDRFRFDN KEGRGTWICN
QCGAGDGLNL VEKTLKLTPT EAALTVGAWL GDLPDSPAAS TQDEEDSEAA RQRAAVQAQA
KLKEAVTQPG NAYLCAKGWP DIAVPTLQGK PLRVGGITYQ PGDVLVPLTT PDGEVVNLQL
INAQGDKRTL KGGQVKGAFH CFSGKQASVI WLAEGYATGL TLHQLTGDAV YVALSANNLP
SLARELKTRH PSATLLIAAD RDENGTGQTK AEQAAVAVNG RVALPPVFGD WNDVYLAEGA
DATRQHLNAF TQPEPVSPFE SLGEAEFKAM SASEKAEKIR EHYRDTLAID AFGETFFQYQ
NGAWKVLPHR LLSRDIAALF QKIQAPFTAA GIDSVINTLK LIVPMQEASQ RRLIGFRNGV
FDTASGEFKP HRREHWLHTV NDVDYTPFKA GENLADNAPH FWRWLTRAAG NHPDKQERIL
AALFMVLANC YDWQLFLEVT GPGGSGKSIL AEITTMLAGD DNTTAATINT IESSRERSSI
IGFSLIVLPD QEKWSGDGAG IKAITGGDAV MVDPKYRDAY STRIPAVILA VNNSPMRFSD
RSGGVSRRRV IIHFGETIPA SERDPKLKEK IRAELAVIVR HLMKRFEEPN DARTLLQAQQ
HSAEALEIKR QADPLVDFCG YLLAHSDTTG LYMGNANITP RNPRKYLYHA YLSFMESHGH
QKPISLTAFG KVLPNMMSEY GQSYLKGRTK QGIQTNLELK DESDADWLPK CESAR
|
|---|
| |