Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3254 |
Symbol | |
ID | 8134226 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3670229 |
End bp | 3671707 |
Gene Length | 1479 bp |
Protein Length | 492 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644866551 |
Product | type VI secretion protein, EvpB/VC_A0108 family |
Protein accession | YP_003018810 |
Protein GI | 253689620 |
COG category | [S] Function unknown |
COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAATAG TTGAAGAACA GGCCCAGGCA GGGGCTGCCA GCGCCTCCGG ATCGCTGCTT GATGACATCA TGGCTCAAGC GCGTATCACC CCGGTCGATG AAGGCTACAG CGTTGCTAAA CAGGGGATTG CCGCACTGGT CGCTAACATT CTTGATAGCG GTAATGCAGC AGAACCCGTG AATAAAGCGC TGGTCGATAG CATGATTGTC GAACTGGACA AAAAGCTCAG TAAGCAGATC GACGTTATTC TGCATGCTAA AGAACTTCAG GAGCTGGAAT CTTCCTGGCG TTCGCTGAAA CTGCTTGTCG ATCGCACTGA TTTCCGTGAA AACATCAAAC TGTTGGTGTT ACATGCGACG AAAGAAGAGC TGTTAGAGGA TTTTGAGTTC GCGCCTGAAA TCTCACAGTC TGGCTTCTAT AAACATGTGT ACTCCAGCGG TTACGGCCAG TTCGGCGGCC AGCCTATTGG TGGCGTGATC GGTGACTATG CGATGACGCA AAGCTCACCA GACATCAAAC TGATGCAGTA CGTCAGCGCC GTTGGCGCGA TGGCGCACGC ACCATTCATC TCTTCCGTTG CGCCGACCTT CTTTGGCGTG GATAGCTTCA CCGATTTACC GTCCATCAAA GATCTGAAAT CCGTTTTCGA AGGCCCTGCC TACACGAAAT GGCGTTCGCT GCGTGAGTCT GAAGACGGTC GCTATCTGGG GCTGACGGCA CCGCGCTTCC TGGCTCGCTT GCCTTACGAC CCGGTAGAAA ACCCGATTAA GGGCTTTAAC TACAAAGAAG ATATCAGCAC CGATCACGAA CACTATCTGT GGGGCAATAC CGCCTACCTG ATGGGAACGG CGCTGACGGA CAGCTTCGCG AAATACCGCT GGTGTCCGAA CATCATTGGC CCGCAGAGCG GCGGTGCGAT TACCGACCTG CCAGTGCATG TTTATGAAGC TATGGGTCAA CTTCAGGCCA AGATCCCGAC TGAAGTCCTG ATCACCGATC GTCGCGAATA TGAAATGGCC GAAGAGGGCT TTATCACGCT GACGATGCGT AAAGACAGCG ACAACGCGGC TTTCTTCTCG GCTAACTCGG TGCAGAAGCC GAAGGTGTTC CCGAACACCA AAGAAGGCAA AGAAGCGGAA ACCAACTACA AGCTGGGTAC GCAGCTGCCG TACATGTTCA TCATCAACCG TCTGGCGCAC TACATCAAAG TGCTACAGCG TGAACAGATT GGCTCATGGA AAGAGCGTCA GGATCTGGAA CGTGAGCTGA ATACCTGGAT TAAACAGTAC ATCGCCGATC AGGAAAACCC GCCGGCAGAT GTCCGTAGCC GTCGTCCTCT GCGTGCTGCA CAAATCAAAG TGCTGGATGT GGAAGGAGAA CCAGGTTGGT ATCAGGTCAC CATGTCTGTG CGCCCGCACT TCAAGTACAT GGGGGCAAAC TTTGAGCTGT CGCTGGTAGG GCGTTTGGAT AAGGAATAA
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Protein sequence | MSIVEEQAQA GAASASGSLL DDIMAQARIT PVDEGYSVAK QGIAALVANI LDSGNAAEPV NKALVDSMIV ELDKKLSKQI DVILHAKELQ ELESSWRSLK LLVDRTDFRE NIKLLVLHAT KEELLEDFEF APEISQSGFY KHVYSSGYGQ FGGQPIGGVI GDYAMTQSSP DIKLMQYVSA VGAMAHAPFI SSVAPTFFGV DSFTDLPSIK DLKSVFEGPA YTKWRSLRES EDGRYLGLTA PRFLARLPYD PVENPIKGFN YKEDISTDHE HYLWGNTAYL MGTALTDSFA KYRWCPNIIG PQSGGAITDL PVHVYEAMGQ LQAKIPTEVL ITDRREYEMA EEGFITLTMR KDSDNAAFFS ANSVQKPKVF PNTKEGKEAE TNYKLGTQLP YMFIINRLAH YIKVLQREQI GSWKERQDLE RELNTWIKQY IADQENPPAD VRSRRPLRAA QIKVLDVEGE PGWYQVTMSV RPHFKYMGAN FELSLVGRLD KE
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