Gene PC1_3251 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3251 
Symbol 
ID8134223 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp3667061 
End bp3668059 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content55% 
IMG OID644866548 
Producttype VI secretion protein, VC_A0111 family 
Protein accessionYP_003018807 
Protein GI253689617 
COG category[S] Function unknown 
COG ID[COG3520] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03347] type VI secretion protein, VC_A0111 family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGGTA CAGATAGGTC AACACTCAAT GATGTGACGT TCCGTCAGGA TGTCTCACGC 
TTTAATTTTT TCCAACTGGT GGAGTTGCTT AACCAACTGG AAGGCGTGGA TCTGGAACAA
GAGCTGGATT TCCGCCCGGA GCAGGAGCGC CTGCGCTTTC GCTCTACCGC CTCCATTGGT
TTTCACCCCG GCGATATCTT GCAGGTGGAA TGCGATGACG AGGGGCGTCA GGAACTGGAG
GTCGCGTTTC TTGGCCTGCA TGGTAGCCAG TCACCGATGC CCGGTTATTA CCTTGAAGAG
CTAGCCTGGG AATACGCACA GGGCGAACAG AAACTGGGCG TGTTTCTCGA CTTCTTTCAT
CACCGCTTAC TTACGCTTTT GCACCGCGCA TGGCGCAAAT ACCGCTATCA CGTGCGTTTT
CAGAATGATG GGGAGGATGG ATTCTCCCGC CTGATGTTTG CGCTCGTGGG GTTAGGGAAT
GACGCCGTAC GCGATAGCTT GCCAGTTAAC CGCGCCAAGA TGCTGTCCTA CGCCGGGGTG
CTCGCAAGCC CTAGTCGCTC GCCAGAAGTG GTCGCGGGAT TGGTTATTCA CTGTTTTGAC
CTGGATGACG TAGCCGTTAT GGCCTGGCAG CACCGCCGCG TCCCCATTCA TGAAGGCCAG
CAGAACCGTC TGGGCAAAGC CAACATGATG CTGGGCGGTG ACTTTGTTAT CGGCGACAAA
GTGAGTGACT GTGCCGGCAA GTTTTTACTC AAGGTCGGCA ACCTCAGTTT TAGCCGCTTC
CTCAGCTTTT TGCCCAACGG CGAGCATTTT CAGCCGCTGG TGCGTTTTGT TTCTTTCATT
CTTCGCGATC AGCTGGCCTG GGATCTGCGT CTTGGCTTTG CGGAAGGCGA AGCCAAGGGC
TTAAGCCTGG GCAGTGAACA AAGTAGCCGA TTGGGATGGA GCAGCTTTCT CGGGCAGCCG
CCCGCGGATC CCTATGTGAC GATTTGTGTG CAGGAGTAA
 
Protein sequence
MAGTDRSTLN DVTFRQDVSR FNFFQLVELL NQLEGVDLEQ ELDFRPEQER LRFRSTASIG 
FHPGDILQVE CDDEGRQELE VAFLGLHGSQ SPMPGYYLEE LAWEYAQGEQ KLGVFLDFFH
HRLLTLLHRA WRKYRYHVRF QNDGEDGFSR LMFALVGLGN DAVRDSLPVN RAKMLSYAGV
LASPSRSPEV VAGLVIHCFD LDDVAVMAWQ HRRVPIHEGQ QNRLGKANMM LGGDFVIGDK
VSDCAGKFLL KVGNLSFSRF LSFLPNGEHF QPLVRFVSFI LRDQLAWDLR LGFAEGEAKG
LSLGSEQSSR LGWSSFLGQP PADPYVTICV QE