Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3251 |
Symbol | |
ID | 8134223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3667061 |
End bp | 3668059 |
Gene Length | 999 bp |
Protein Length | 332 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644866548 |
Product | type VI secretion protein, VC_A0111 family |
Protein accession | YP_003018807 |
Protein GI | 253689617 |
COG category | [S] Function unknown |
COG ID | [COG3520] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03347] type VI secretion protein, VC_A0111 family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCGGTA CAGATAGGTC AACACTCAAT GATGTGACGT TCCGTCAGGA TGTCTCACGC TTTAATTTTT TCCAACTGGT GGAGTTGCTT AACCAACTGG AAGGCGTGGA TCTGGAACAA GAGCTGGATT TCCGCCCGGA GCAGGAGCGC CTGCGCTTTC GCTCTACCGC CTCCATTGGT TTTCACCCCG GCGATATCTT GCAGGTGGAA TGCGATGACG AGGGGCGTCA GGAACTGGAG GTCGCGTTTC TTGGCCTGCA TGGTAGCCAG TCACCGATGC CCGGTTATTA CCTTGAAGAG CTAGCCTGGG AATACGCACA GGGCGAACAG AAACTGGGCG TGTTTCTCGA CTTCTTTCAT CACCGCTTAC TTACGCTTTT GCACCGCGCA TGGCGCAAAT ACCGCTATCA CGTGCGTTTT CAGAATGATG GGGAGGATGG ATTCTCCCGC CTGATGTTTG CGCTCGTGGG GTTAGGGAAT GACGCCGTAC GCGATAGCTT GCCAGTTAAC CGCGCCAAGA TGCTGTCCTA CGCCGGGGTG CTCGCAAGCC CTAGTCGCTC GCCAGAAGTG GTCGCGGGAT TGGTTATTCA CTGTTTTGAC CTGGATGACG TAGCCGTTAT GGCCTGGCAG CACCGCCGCG TCCCCATTCA TGAAGGCCAG CAGAACCGTC TGGGCAAAGC CAACATGATG CTGGGCGGTG ACTTTGTTAT CGGCGACAAA GTGAGTGACT GTGCCGGCAA GTTTTTACTC AAGGTCGGCA ACCTCAGTTT TAGCCGCTTC CTCAGCTTTT TGCCCAACGG CGAGCATTTT CAGCCGCTGG TGCGTTTTGT TTCTTTCATT CTTCGCGATC AGCTGGCCTG GGATCTGCGT CTTGGCTTTG CGGAAGGCGA AGCCAAGGGC TTAAGCCTGG GCAGTGAACA AAGTAGCCGA TTGGGATGGA GCAGCTTTCT CGGGCAGCCG CCCGCGGATC CCTATGTGAC GATTTGTGTG CAGGAGTAA
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Protein sequence | MAGTDRSTLN DVTFRQDVSR FNFFQLVELL NQLEGVDLEQ ELDFRPEQER LRFRSTASIG FHPGDILQVE CDDEGRQELE VAFLGLHGSQ SPMPGYYLEE LAWEYAQGEQ KLGVFLDFFH HRLLTLLHRA WRKYRYHVRF QNDGEDGFSR LMFALVGLGN DAVRDSLPVN RAKMLSYAGV LASPSRSPEV VAGLVIHCFD LDDVAVMAWQ HRRVPIHEGQ QNRLGKANMM LGGDFVIGDK VSDCAGKFLL KVGNLSFSRF LSFLPNGEHF QPLVRFVSFI LRDQLAWDLR LGFAEGEAKG LSLGSEQSSR LGWSSFLGQP PADPYVTICV QE
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