| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3246 |
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| Symbol | |
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| ID | 8134218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3660574 |
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| End bp | 3663171 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644866543 |
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| Product | type VI secretion ATPase, ClpV1 family |
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| Protein accession | YP_003018802 |
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| Protein GI | 253689612 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATTCGAA TTGAACTGCC GACACTGGTT GAACGACTCA ACCCCGTGTG CCGTCATATG
CTGGAAGAAG CGGCGGCACT CTGTATTCAG CATCAGGGTG CGGAAATCCG TATTGAGCAC
CTGTTGATGA AAATGCTGGA AACGCCCCTG TGTGATGTAC GCCAGATCCT CAAGCGTGCG
AGCGTCGATG CGGATGAGCT GTCTTCACTG CTTTTGCCTT CCTCCGTGGA TAAGGAATTT
GACGCGGGCT ACCCTTCATT CTCTCCTCTG CTGGTGGAGT GGTTGCAGGA TAGCTGGCTG
CTGGCGTCGG CGGAATTTCA ACACACGCGT TTGCGTAGCG GCATTCTGCT GCTGGTCTTG
CTGATGACGC CAAATCGCTA TGTGGCAGGC GCGATATCTC GTCCGCTGGC GCAGATCAAC
CGTGAGCTTT TACGCCAGCA GTTTGATGAA TGGGTGAAGG ATTCGGTTGA AACGGAAGTC
GCGGTGCAAT CGGCTACAGC CGAACAAGCC GTGGCGGCGA CCACGCAGTT GTCCCGCTAT
ACCCAAAACG TAACGGAATC TGCCCGACAG GGACAGTTGG ATCCGGTGTT GTGCCGCGAC
CATGAAATCG ATCTGATGAT CGACATTCTC TCTCGCCGTC GTAAAAACAA CCCGATTGTT
GTCGGGGAGG CGGGCGTGGG TAAAAGTGCG CTGATCGAAG GGCTGGCGCT GCGCATCATT
GCGGGCGCGG TGCCGGAAAG ATTGCGGGAT GTCGAACTGC TTACGCTCGA TCTGGGAGCG
ATGCAGGCTG GCGCCTCGGT GAAAGGTGAA TTTGAGAAAC GCTTCAAAGG TGTGATGCAG
GAAGTGAAAG AGGCGCCGCG CCCTATCATT CTGTTTATCG ATGAAGCGCA TACGCTCATC
GGGGCCGGTA ATCAGGCGGG CGGGCTGGAT GTTTCCAACC TGCTCAAGCC AGCGCTGGCG
CGCGGTGAAC TGCGTACGAT CGCGGCAACG ACCTGGAGCG AATACAAAAA ATACGTGGAG
AAGGACGCCG CGCTTTCCCG TCGTTTCCAA CTCGTCAAAG TGGGTGAGCC GAACGCGGAA
GAAGCCACGG TTATCTTACG CGGGCTGCGC GGCATCTATG AAAAGGCGCA CGGCGTCCTG
ATTGATGAAG ATGCGCTTCA GGCGGCGGCA CAGCTGTCGG CGCGTTATAT CTCCGGCCGT
CAACTGCCGG ATAAGGCGAT TGACGTGCTG GATACCGCCA GCGCGCGCGT CGCCATTAAC
CTGACGACGC CACCGCGTGC GGTCAGCCAG CTCCAGACTC GCCTGCGCCA GCAGGAGATG
GAAATCACCC AGCTTGAGCG TCAGGCGCGT ATCGGCTTGG GCAATACCGA AGAGCGGTTA
GCGGAACTGC GTGACGCCCG TGAGGCCGGC GCGGCACAGC TGGCGCAGTT GGAAGCCGAT
TGGCAGCAGC AGAAAACGCA GGTTCAGCGC GTGATTGAAC TGCGTACCGC GCTGCTGGAT
GACGAGCAGG CTGTCGATTT TGATGCAGCA TCGGCGACGG CGGAGCTGGC CGCCTGTGAA
CAGGCGCTGG AAGCACTGCA ACACTCCTCC GTTCTGGTCT CCCCTCACGT TGATAAAACG
CAGATTGCGG CGGTTATTGC CGAGTGGACG GGCGTGCCGC TGAATCGCAT CTCACAGGGT
GAAATGGATG TCGTCACGCG CCTGCCTGAA TTCCTGGGCG AGTCGATTAA AGGGCAGCAG
TTGGCGATTG CCCACCTGCA TAAACACCTA CTGACCGCGC GCGCCGATCT ACGTCGTCCG
GGGCGTCCGC TGGGGGCTTT CCTGCTGGTG GGGCCGAGCG GTGTGGGTAA AACGGAAACC
GTGGTGCAGA TCGCCGACCT GATGTTTGGC GGACGTAACT ATCTGACCAC TATCAATATG
TCCGAGTATC AGGAGAAACA CACGGTTTCA CGTCTGATCG GGTCACCGCC GGGCTATGTC
GGGTTTGGTG AAGGAGGCGT CTTGACCGAA GCTATCCGCC AGAAACCGTA TTCCGTGGTA
CTGCTGGATG AAGTGGAAAA GGCGCATCCC GATGTCCTGA ACCTGTTCTA TCAGGCGTTT
GATAAAGGTG AACTCGCCGA TGGCGAAGGC CGAGTGATCG ACTGTCGCAA CGTGGTGTTC
TTCCTGACGT CCAACCTCGG GTTCCAAACG ATCGTGAATT ACGCTGAGCA GTCGGATGTG
TTGCTGGACG CGCTCTATCC CGAACTGGCG GCCTTCTTTA AACCTGCGCT GTTGGCGCGC
ATGGAAGTCA TTCCGTACCT GCCGCTGGCG CATGACACCA TGGTCGAAAT TGTACAGGGC
AAACTGTCGC GTCTGGTGTC TCTGCTGCAA CAGCGCTTTG GCGCGGAAGT CATTATTGAA
GACGAGGTGC CGGAAGAGAT TCTGCGGTTG GCGAACCGCA GCGAAAATGG GGCGCGTATG
CTCGAATCGG TGATTGATGG TGCCTTGCTG CCGCCGGTTT CGCTACAGCT GCTGCAACGC
CTGTCTGCGG GCGAACCCGT CAGCCGCATT CATTTCCGCG TCGACGCCGG CCAGTTCCAG
ACTGAGGTGG AGGGCTGA
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| Protein sequence | MIRIELPTLV ERLNPVCRHM LEEAAALCIQ HQGAEIRIEH LLMKMLETPL CDVRQILKRA
SVDADELSSL LLPSSVDKEF DAGYPSFSPL LVEWLQDSWL LASAEFQHTR LRSGILLLVL
LMTPNRYVAG AISRPLAQIN RELLRQQFDE WVKDSVETEV AVQSATAEQA VAATTQLSRY
TQNVTESARQ GQLDPVLCRD HEIDLMIDIL SRRRKNNPIV VGEAGVGKSA LIEGLALRII
AGAVPERLRD VELLTLDLGA MQAGASVKGE FEKRFKGVMQ EVKEAPRPII LFIDEAHTLI
GAGNQAGGLD VSNLLKPALA RGELRTIAAT TWSEYKKYVE KDAALSRRFQ LVKVGEPNAE
EATVILRGLR GIYEKAHGVL IDEDALQAAA QLSARYISGR QLPDKAIDVL DTASARVAIN
LTTPPRAVSQ LQTRLRQQEM EITQLERQAR IGLGNTEERL AELRDAREAG AAQLAQLEAD
WQQQKTQVQR VIELRTALLD DEQAVDFDAA SATAELAACE QALEALQHSS VLVSPHVDKT
QIAAVIAEWT GVPLNRISQG EMDVVTRLPE FLGESIKGQQ LAIAHLHKHL LTARADLRRP
GRPLGAFLLV GPSGVGKTET VVQIADLMFG GRNYLTTINM SEYQEKHTVS RLIGSPPGYV
GFGEGGVLTE AIRQKPYSVV LLDEVEKAHP DVLNLFYQAF DKGELADGEG RVIDCRNVVF
FLTSNLGFQT IVNYAEQSDV LLDALYPELA AFFKPALLAR MEVIPYLPLA HDTMVEIVQG
KLSRLVSLLQ QRFGAEVIIE DEVPEEILRL ANRSENGARM LESVIDGALL PPVSLQLLQR
LSAGEPVSRI HFRVDAGQFQ TEVEG
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