| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3238 |
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| Symbol | |
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| ID | 8134210 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3647323 |
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| End bp | 3649359 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644866535 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_003018794 |
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| Protein GI | 253689604 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCAAACA GTACAGGATT ACAGTTCACC GTTAAGGTCG GTGCCCTGGC GGCAGGCACT
TTTGCAGTAG TGGATTTCAG GTTGGATGAA GGATTGAACC GGCCTTTCAG CCTGTCGCTG
AGTCTGGCGA GTGCACAGCC GGATGTCGAT TTCGGCGCGG TGTTGGACCA GCCGTGCGAG
CTGATGATTT GGTATGAAGG CGAGCTGAAA CGCCGGGTCA GCGGGATTGT CAGTGGCTTC
ACGCAGGGCG ACACCGGTTT TCGGCGCACG CGCTATCAGA TAGAAGTTCG TCCGGCGCTG
TGGCGACTGG GGCTGCGCAC CAACGCCCGT ATTTTTCAGG CACAAAAGCC GGAAGCCATT
ATCAGCATGC TGCTGGAAGA GGCTGGCATC ACTGACTACG CCTTTGCGCT GCGTAACGAG
CATGCGGTGC GGGAATATTG CGTGCAGTAC CGGGAAAGCG ATTTGGCGTT TATCACCCGT
CTGGCTGCGG AGGAAGGCAT GTACTTCTTC CACGAATATG AAGAGGGCAA ACACCGGGTG
GTGTTTGCCG ACGATGCGGG GGCGCTGACC AAAGGCCCCG AGCTGTTCTT CAATCTCGCC
ACGCAGGGGC TGAGCGAGGG CGAATACGTT CGGCGCTTCC ACTACGCAGA GCGGGTGAGC
ACGGCTGAAG TCGAGCTGAA AGACTATAGC TTCAAGACGC CGGCTTACGG GCTGTCGCAC
AAGAAGATGA GCGGTGAGCT GGAACACCAG CGTGAAAGTT ACCAACATTA CGACTATCCG
GGACGCTATA AACAAGACCC GAGCGGCAAG GCGTTCAGCG GCTACCGGCT GGATGCGTTG
CGGTCTGGAG CCGTGACGAG CGAAGGGGAA TCCAACTGCG CGGGGCTGAT GCCGGGCAGT
ACGTTTACCC TGACAGAGCA CCCGAATGCG ACGCTGAATG CGGTGTGGCA GACGGTGAGC
GTGACGCACG TCGGGCAACA GCCGCAGGCA CTGGAAGAGG AAAGCGGTGG CGAACCAACC
ACGATGAGCA ACAGTTTTGC GGTGGTGAAA GGGACAACAA CGTGGCGCGC CGCGATGCCG
TATAAACCGA TGGTGGACGG CCCGCAAATC GCCACTGTTG TCGGTCCGAC TGGGGAAGAA
ATCTACTGTG ACCCGTATGG TCGGGTGAAA CTGCAATTCC CGTGGGACAG ATACGGCGCG
AGCAATGACC AGAGCTCCTG CTGGGTGCGG GTGAGTCAGG GCTGGGCGGG CGGTCAGTAC
GGCATGATTG CTATCCCCCG TATCGGCCAT GAAGTGATCG TCAGCTTCCT TGAAGGTGAC
CCGGATCAGC CGATTGTCAC CGGGCGTACC TTCCACGCGA CCAATCCGAC ACCGTACGTT
TTACCGGCAC ATAAAACGCG CACGACGCTA CGTACCGATA CTCATAAAGG CAGTGGCTTC
AACGAACTGC GTTTTGAGGA TGAGGCGACG CGTGAACAAA TTTACTATCA CGCTCAGAAA
GATATGGATG GTGTCATCAA CAACATCCAT CGGCAGAGTG TCGGGCGCGA TCAGCACCTC
AGCGTGGATC AAGATCAGTT CCAACGGGTT ACTCGTCACC GTCACCGAAC GATAGGTAAG
GACGATTTTG AAAATATCGG TCAGGACCAT CATCAGGAAA TTGGTCGGAG CTTTATTCAG
AAGATTGGTG CGTCGTTCAA ACGTTTCATC GGCGGGGGAG AGATTACCCG TATCGAAGGG
AGTCGGCAGA CTACGATGTC CGGTTCTGAA GAGACGCTGA TCGGTGCGCA CCAGCGTGTT
CTGGTGAATA CGGACAGCTA CCTGAAAGCC GCCGATATCG TACTGGAAGC AGGGCAAGCG
TTGACCATCA AGGCGCCGGG CGGTTTTATC AAGATTGATA GCGCGGGCGT GACGATTTCC
GGGACGATTG TAAAAATCAA CGACGGCGGT GCGGCTGGCG TAGGGACTGC GCCGGTATCG
ATTACGCCAG AAGATCCGAC GAAGCCCACG CTGCCGGATG CACCAGACAG ACGTTAA
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| Protein sequence | MANSTGLQFT VKVGALAAGT FAVVDFRLDE GLNRPFSLSL SLASAQPDVD FGAVLDQPCE
LMIWYEGELK RRVSGIVSGF TQGDTGFRRT RYQIEVRPAL WRLGLRTNAR IFQAQKPEAI
ISMLLEEAGI TDYAFALRNE HAVREYCVQY RESDLAFITR LAAEEGMYFF HEYEEGKHRV
VFADDAGALT KGPELFFNLA TQGLSEGEYV RRFHYAERVS TAEVELKDYS FKTPAYGLSH
KKMSGELEHQ RESYQHYDYP GRYKQDPSGK AFSGYRLDAL RSGAVTSEGE SNCAGLMPGS
TFTLTEHPNA TLNAVWQTVS VTHVGQQPQA LEEESGGEPT TMSNSFAVVK GTTTWRAAMP
YKPMVDGPQI ATVVGPTGEE IYCDPYGRVK LQFPWDRYGA SNDQSSCWVR VSQGWAGGQY
GMIAIPRIGH EVIVSFLEGD PDQPIVTGRT FHATNPTPYV LPAHKTRTTL RTDTHKGSGF
NELRFEDEAT REQIYYHAQK DMDGVINNIH RQSVGRDQHL SVDQDQFQRV TRHRHRTIGK
DDFENIGQDH HQEIGRSFIQ KIGASFKRFI GGGEITRIEG SRQTTMSGSE ETLIGAHQRV
LVNTDSYLKA ADIVLEAGQA LTIKAPGGFI KIDSAGVTIS GTIVKINDGG AAGVGTAPVS
ITPEDPTKPT LPDAPDRR
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