| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3233 |
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| Symbol | |
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| ID | 8134205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3638202 |
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| End bp | 3643121 |
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| Gene Length | 4920 bp |
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| Protein Length | 1639 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644866530 |
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| Product | YD repeat protein |
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| Protein accession | YP_003018789 |
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| Protein GI | 253689599 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.471244 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCAGG ATAAACAGGA TTCATTACAC CAAAGTAGTG CTGCTGCGGA AAAAAAGTTT
TCAACGGACA AAATCATTCA AGGAGGATGT AAAGAATGTA AGTGTGAAAC CTTTGTTCAA
TATGTCTACT CGTCAGGAGA TCCTGTACCA AATGCTCCTT TTGTTTTAAC CGATAGCAAA
GGGAACAAAA CGGATGGGCA AACGGATGAA AATGGATACT TTAAAATCCA AAATATGGCG
TGCAGTACTT ATCAACTTGA TATTCATGAA GGCTCTGATG ATTTTGATTC CCCTGATACC
GTAGAAAATA ATCCAGTACT TCAAGCTAAT CCCGCTCATG CAGCATTAGC AGGAGAATAT
TTTACCCTTT ATTTACTACT GCATGAAAAA GGGATTGTAG AGTACGACGC TGAGGACAGT
GAGCGTTATG ATGAAGTTAA TGTTGATGAT AGTACATGGA GTGGACGATT TTTTTCTAAT
GTTGAAGATA AATATCAGCT AGCCTATGAC CGTTTCCAAA TATTAAAAAA ACAAATTAAT
GCAGGGGATC GTGAATTTAA GCGGGCAATT AATAAAATTC ATCATAGCTT GTCGGCAGAG
GTTGCTGATC AGACAACAGA AACAGCAGTT TTGCTACTTT GTCAAATTAT TCTCGGTTTT
ATTCCTGTTG TTGGTCAGGC TCCCGATGTC TATTTTATTG GTGAGTGGTG TTGGGCTGCC
TATAAAAAAC CAGATAACTT AGAGGATAAC TACTTCCTTG CTGAAGGTGC ACTGAATATC
GTAGGTGTCA TTCCAGGTCC TGGACATGCG CTAAAAATTG CAGGTAAATC TGTTGTTCGT
GCAATGAAAG CATTAGAAAA AAGTGCGTTG GATAATCAGG CCGTTCAACT GGCTGTTCGT
GAAATTAGAA ATCTATCTAA TGGTAATATA GTTCGATGGT TAATGGACTT TGCTGAAAAA
ATTAATAAGG AAGCCAAAGA GGCTTTAAGT CTGCTCAATA AAATAATTAC GGCTATTGAA
CTGATGGTGA ATAATGCCAC AAGTTCAGCA AAAAGTTGGA TTATTGCATT TGCAAAAGAT
AGTTTTTCAG CAATTTGTGG TGTTATTAAA AAGCTCATTA ATAAATTTAA AGAAATTATT
GATGAGATTA TCCAAAAAGT TAATACGTTT ATTGGGAAAA TTATTACCAG AAAGTCTGGA
ACAGCGGTAG GAAAAGATAA GGCGGCAAAG CCTGAAATTA AGGTAGCAGA TAAAACGCCA
TCAGATGTTG ATGGCACTCC CGGTCATGCG TCATCTACGG CTGGTACGGC AGATGGAAAG
ACCTGCTCTA CATCAAATAA ATGCCAAGGT GAAGGTGAAC CGGTCGATAT GGCCACAGGG
TATATGGTGG AGTGGCGTAC TGATTTCCAA TTAGCAGGTA TTTTACCGCT GGCGATTAAA
CGTTATTACC GTTCTGGTGG TGAGCGAAAG CCTGGTTTAT TAGGATCATT ATGGCGTAGT
AACTGGGATA TTAGCCTGAC ACTTGAAGAC GGTGTGGTGA CATTAATTGA TGGTGAGTTC
AATCAGGCGA TATTTGTTTT GCCTGTCGAG GGTGAATCTA CGCGTTCACC ATCTAACCCT
CAGTGGCGAT TGATCCGCCA ACAGGGACGG TTAATTCTGC AAGATGCCGG TGGTTTGCAC
TATCGCTTTG AGCACGCCAG AGGGAAGGAA TTATGCCTAA CATCCATAGA GGATCGGCAG
AATAACCAGA TCTCGCTGAT TTGGGAGTTT GGCGTATTAC GTTGGGTAGC TTTGCCTGAC
AACCGCTTGA TTCATGTGGA AACTCGTCGC CAACGTATTA CTTGTTTAAC GTTATGTGAT
ACCCATCGCA AGCCTTTGAA AAAATTGGCT AACTATACCT ATGACAACAG CGGACATTTA
TTGAGTGTGC GGGCGGATGA GGGACGCAAC TTTGACTATC GCTACTCACC GGAAGGTTGG
CTGCTGCGCT GGTCGGATTT AGGTTCGACC TGGGTTGAAC ACGACTACGA TAAAAAAGGT
CGTGTAATAC GTGATCGAAC CTCGGAAGGC TATTGGCCGG GGCACTTTGA ATATGACGAT
GACACCCTGA CCAGCCATTA CTATAGCGGG TTTGGCGGGG TGATCAGCTA TGTGCGCGAC
GATCGCAACA ATATCCTGCT CAAACGCACG CCAGACGGCG GTGAGACCCG GTTTGAGTGG
GTGGACAACC AACTGGCGGC AGAGACCGAC CCGCTGGGTG GCCGCACGGT GTATCAGCGT
AATGACTGGG GACAGGTAAC CGAAGTTATC TTACCCGACG GCGCGACGCA TCAGTATGCG
TATGATGATA ATGGACATCT GCTGGCCTAT ATCGACCCGC TGGGCAGCGA ATGGCGCTAT
CAGCGTAATG CGGCAGGGCA GGTTGTCGAG GTGAACGACC CGGAAGGGCG CGAGTGGCTG
TACCGTTACG GCGACACGGG GCAACTGTCG ACGGTGATAG GGCCGGACGG TGTGTTGCAG
CGTTATCACT ATAATCGTCG TGGTCTGCTG AGCAGCCTTG AGCGGGATAA TGCACCGCCG
GTAGCGTTCC GGTATGACGA CCTTGACCGC CTGACGGAGC GGCATATCGG GCATGAGGCG
GGCGTGCAGG TGCGGCGCTG GGAGTATGAC GGCGCGCGCG AGTCACCGTC GAAAGTGGTG
TACGAAGACG GCAGCGAGAC GCGGTTTGGT TACGATGTGG AAGGTAACCT GACGGCGGTG
ACGGATGCAC TGGGTCAGCG CTATCAGTTC CGCTACGGAG CGTTCGATAA CCTGCTGGAA
GCGACCGACC CGCTGGGGGC GACGGTGCGC TACCACTACA ATGCGGAGGC TGAGTTCGCC
GGGGTGACGA ACAGTCAGGG ACGGGACTGG ACGTACGGTT TTGACAGCAG CGGGCGACTA
AGCGAGGAAC GGCATTACGA CGGTCGGGTA TACCGGTATC AGTACGATGT GGCCGACCGT
CTGGTGCAGC GCACCGCGCC GGATGGCAGT GAGCTGCATT ATGAGCACGA TGCAGCAGGG
CGGATAACGT ATATCACGGC GCGGAAAGCG GATGGGGAAA CGGACGGCAT CACCGAGCTG
GCATATGATG TTGCCGGTAG GCTGACCAAA GCCGCCAGCC CGGATGCGGT GGTGGAGTAC
GCCTATAACC GTGCGGGGCA GGTGACGTCG GAAACGGTGA ACGGCGAAGC GGTGCAGAGC
GGTTACGACG CGGGTGGTCA GCGTGCGGTG GTAGAGGGGA TTCTGGCGCC GCTGCAACTG
GCCTGGCAGT CGGGACGGCT GTCATCGCTG GGTATCGGCT CCCACCAGCC GTTGCAGTTC
AGCCACACGG CAGCAGGGGA AGAGCAGAGA CGCACTAACG GCAGCGGTTT TTCACTGCGT
CACGAGTGGA GCCCGACGGG GCTGTTGCAG CGTCAGGCGC TGGAAGGGGC AGACGGCCGG
GTGAATGACG TGCTGGAGCG TCGTTACCAG TACGATGTGC TGGACCGTCT GACGGGCATC
AGCGACAGCC ACTGGGGTGA GCAGGCATTC CGGCTGAACG GGGCAGGTCA GGTGACGGCG
GAGCGCCGTG ATGAGGGGCG GCGGCGTCAG GCGCGGCTGT TTGGTTACGA CAGCGAACAG
AACCTGTGCG AGGTGTCGCA GATAGCGCCG GGTCTGGGTG AGACGCTGAA GGTGCAGGAT
GCGGTGGTAC AGTCATCGGC GCGGTATGAT GCGGCGGGAC GGGTCATCGA GCGGGGCCAT
ACACAGTACC GGTATGATGA CTGCGGGCGT CTGGCGGTGA AGCGTGAAAC ACGGCCGGGG
TTCAGGCCGA AGGAAACATA TTTCGACTGG GACGTGCAGG ACCGGCTGGT GCGGGTGAGC
CTGCCGGACG GGGTACGCTG GCGCTATCGT TACGATGCGT TTGGGCGCAG AATCAACAAG
GTGCGCGAGG GCCAGGTGCC GTCGGCGCAG GCGGTAGCGC GGGTGGCGTA CCGATGGGAC
GGTGACCAGC TGATTGGTCA GCAGCAGTTC CGGGCAGACG GTTCAGCGGC ACGGGAAGTG
CAGTGGGTAT ACGAGCCGGG GAGCTTCCGA CCGCTGGCAC AGGTCGAGGC ACAGGGCGAC
AGCACGCAAC TGCACTACAT TGTGACGGAC CTGACAGGAA CCGCGAGAGA GTTGTGCAGC
GAGGAAGGAG AAATCCGCTG GCGTGGCGAA CAGGGACTTT GGGGCGCACA CCGGGAAGAG
CGACGACCTA TCCCGCTGCG TCGCTATCTG GGGGATGCGG CGAACGAAGA GGTGTACTGC
GAGCTGCGCT ATCAGGGGCA GTTGTATGAC GCAGAAACGG GGCTTTACTA CAACCGGCAT
CGTTACTATG ATGCGGAGAG CGGACAGTAT CTGTCGCCGG ACCCGATAGG GTTACTTGGT
GGTCTGAGGC CGCAGGGGTA TGTCGCAAAT CCTTTAGAAT TCTGTGACCC GTTGGGGCTG
GCACGGTCTG TTTGTCAGGC TCGCTATGAA AGGTATAAAG ACTATCGCTC ACAAGGATAT
TCGGCTGAAG AGGCTGCGAA ATTATCCAAA GGAGCTAACC CTGCAATGAT TACCCCTGGC
TCTCTTCCTG CTGCGGAAGA AGCAGCAGTA AATAGAACGC TAGGACATAT TGATAACGGA
GATAAACCTG CTGGAGCTCT TGGGAAAAAA TGGGGAACTA CATTTAAAAA TCATCAAGGT
GAATTGCCTG GTGGAAGTGG TGCAAATTCT CCTTATAGCG AGTATCGAGT AGATCCCGGC
CCTGGTGTAA GTGGAGCAGG AGCTAGACGA GTTGTTGTCA ACAATAATAC GGGTGAAACA
TATTATACAT GGACGCATTA CGGTGATTCA GGAAACCCAT CTTTTGTGAG GATTAGATGA
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| Protein sequence | MSQDKQDSLH QSSAAAEKKF STDKIIQGGC KECKCETFVQ YVYSSGDPVP NAPFVLTDSK
GNKTDGQTDE NGYFKIQNMA CSTYQLDIHE GSDDFDSPDT VENNPVLQAN PAHAALAGEY
FTLYLLLHEK GIVEYDAEDS ERYDEVNVDD STWSGRFFSN VEDKYQLAYD RFQILKKQIN
AGDREFKRAI NKIHHSLSAE VADQTTETAV LLLCQIILGF IPVVGQAPDV YFIGEWCWAA
YKKPDNLEDN YFLAEGALNI VGVIPGPGHA LKIAGKSVVR AMKALEKSAL DNQAVQLAVR
EIRNLSNGNI VRWLMDFAEK INKEAKEALS LLNKIITAIE LMVNNATSSA KSWIIAFAKD
SFSAICGVIK KLINKFKEII DEIIQKVNTF IGKIITRKSG TAVGKDKAAK PEIKVADKTP
SDVDGTPGHA SSTAGTADGK TCSTSNKCQG EGEPVDMATG YMVEWRTDFQ LAGILPLAIK
RYYRSGGERK PGLLGSLWRS NWDISLTLED GVVTLIDGEF NQAIFVLPVE GESTRSPSNP
QWRLIRQQGR LILQDAGGLH YRFEHARGKE LCLTSIEDRQ NNQISLIWEF GVLRWVALPD
NRLIHVETRR QRITCLTLCD THRKPLKKLA NYTYDNSGHL LSVRADEGRN FDYRYSPEGW
LLRWSDLGST WVEHDYDKKG RVIRDRTSEG YWPGHFEYDD DTLTSHYYSG FGGVISYVRD
DRNNILLKRT PDGGETRFEW VDNQLAAETD PLGGRTVYQR NDWGQVTEVI LPDGATHQYA
YDDNGHLLAY IDPLGSEWRY QRNAAGQVVE VNDPEGREWL YRYGDTGQLS TVIGPDGVLQ
RYHYNRRGLL SSLERDNAPP VAFRYDDLDR LTERHIGHEA GVQVRRWEYD GARESPSKVV
YEDGSETRFG YDVEGNLTAV TDALGQRYQF RYGAFDNLLE ATDPLGATVR YHYNAEAEFA
GVTNSQGRDW TYGFDSSGRL SEERHYDGRV YRYQYDVADR LVQRTAPDGS ELHYEHDAAG
RITYITARKA DGETDGITEL AYDVAGRLTK AASPDAVVEY AYNRAGQVTS ETVNGEAVQS
GYDAGGQRAV VEGILAPLQL AWQSGRLSSL GIGSHQPLQF SHTAAGEEQR RTNGSGFSLR
HEWSPTGLLQ RQALEGADGR VNDVLERRYQ YDVLDRLTGI SDSHWGEQAF RLNGAGQVTA
ERRDEGRRRQ ARLFGYDSEQ NLCEVSQIAP GLGETLKVQD AVVQSSARYD AAGRVIERGH
TQYRYDDCGR LAVKRETRPG FRPKETYFDW DVQDRLVRVS LPDGVRWRYR YDAFGRRINK
VREGQVPSAQ AVARVAYRWD GDQLIGQQQF RADGSAAREV QWVYEPGSFR PLAQVEAQGD
STQLHYIVTD LTGTARELCS EEGEIRWRGE QGLWGAHREE RRPIPLRRYL GDAANEEVYC
ELRYQGQLYD AETGLYYNRH RYYDAESGQY LSPDPIGLLG GLRPQGYVAN PLEFCDPLGL
ARSVCQARYE RYKDYRSQGY SAEEAAKLSK GANPAMITPG SLPAAEEAAV NRTLGHIDNG
DKPAGALGKK WGTTFKNHQG ELPGGSGANS PYSEYRVDPG PGVSGAGARR VVVNNNTGET
YYTWTHYGDS GNPSFVRIR
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