Gene PC1_3202 details

Gene Information

• Locus tag: PC1_3202
• Symbol: rimM
• ID: 8134169
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: -
• Start bp: 3609923
• End bp: 3610471
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 644866497
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_003018761
• Protein GI: 253689571
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0025103
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAATC AACTCAGCCC AAAGCCTCCC GTTAACCCGA TTGTGATGGG GAAAATTGGA 
TCGGCGTATG GCATCCGAGG TTGGCTCAGA GTGTTTTCAT CCACCGAAGA TGCCGAGAGC 
ATTTTTGATT ATCAGCCTTG GTTCATCCAG AGCAAAAGCG GTTGGCAGCT TGTCGAGATT 
GAAGGCTGGA AATATCACAA TCAGGATCTG ATCATTAAAG TGAAAGGTAC TGATGACCGT 
GATGCGGCTA ATTTACTGAC TAATTGCGAA ATTGTCGTAG ATTCGTCACA ACTGCCCGAT 
CTGGGCGAAG GTGATTATTA CTGGAAGGAT CTTATGGGCT GTCAGGTCGT GACCGTAGCC 
GGTTATGAGT TGGGTAAAGT CATCGATATG ATGGAAACCG GCTCAAACGA TGTGATGGTG 
ATAAAAGCCA ACCTGAAAGA TGCCTTCGGA GTCAAGGAAC GGCTGGTTCC GTTCCTCACT 
GAACAGGTTG TTAAGCGCGT CGACCTTTCT ACTCAAACTA TTGAAGTAGA TTGGGATCCT 
GGTTTTTGA 

 

Protein sequence

MSNQLSPKPP VNPIVMGKIG SAYGIRGWLR VFSSTEDAES IFDYQPWFIQ SKSGWQLVEI 
EGWKYHNQDL IIKVKGTDDR DAANLLTNCE IVVDSSQLPD LGEGDYYWKD LMGCQVVTVA 
GYELGKVIDM METGSNDVMV IKANLKDAFG VKERLVPFLT EQVVKRVDLS TQTIEVDWDP 
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