| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3143 |
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| Symbol | rluD |
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| ID | 8134110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3564156 |
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| End bp | 3565133 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644866438 |
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| Product | 23S rRNA pseudouridine synthase D |
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| Protein accession | YP_003018702 |
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| Protein GI | 253689512 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACAAC AAGTACAACT CACCGCAACG GTGGCCGAAT CTCAACTCGG ACAACGTTTA
GATCAGGCTT TGGCCGAATT GTTCCCTGAT TATTCACGAT CCCGTATAAA AGAGTGGATT
CTTGAGAATC GGGTACAGAT TAACGGCAAT GTCACCAATA AGCCAAAAGA GAAAGTACTT
GGCGGCGAAT CGGTAGCGAT TGATGCATTG ATTGAAGAAG AAGCCCGCTG GGAAGCACAG
GATATCAAGC TGGATATCGT GTATGAAGAT CAGGATATTC TGGTCATCAA CAAACCCAGA
GATCTGGTGG TTCACCCCGG AGCGGGTAAC CCGGATGGCA CGGTATTGAA TGCCTTGTTG
CATCATTATC CTGAGATTGT CGATGTGCCT CGTGCCGGAA TCGTGCACCG GCTTGATAAA
GATACGACGG GGCTCATGGT GGTCGCGAAA ACCGTACCAG CACAGACGCG TTTGGTTGAG
GCGCTACAGG CGCGCGAAAT TACCCGTGAG TATGAAGCCG TTGCGATTGG CTCGATGACG
GCAGGCGGCA TGGTCGATCA ACCTATCGCC CGCCATTCAA CCAAACGTAC TCATATGGCA
GTGCACCCAA TGGGTAAGCC TGCTGTAACA CATTATCGCA TCATGGAACA TTTCCGTGCG
CATACCCGTT TGCGGTTGCG TCTGGAAACG GGGCGCACCC ATCAGATTCG TGTGCATATG
GCACACATTA ATCATCCCCT GGTTGGCGAT CAGCTATACG GCGGTCGTCC TCGTCCACCA
AGAGGCGCTT CGGAAGCGTT CATTGAGACG CTGCGTGGTT TCGACCGTCA GGCGCTGCAT
GCCACCATGT TGCGTTTCTA CCATCCGATT ACCGGCATTC ACATGGAATG GCATGCGGAA
TTGCCGCAGG ATATGGTTGA TCTGATTGAT GCGCTGAAAG CCGATACCGA AGAATTTAAA
GATCAGCTCG ACTGGTAA
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| Protein sequence | MAQQVQLTAT VAESQLGQRL DQALAELFPD YSRSRIKEWI LENRVQINGN VTNKPKEKVL
GGESVAIDAL IEEEARWEAQ DIKLDIVYED QDILVINKPR DLVVHPGAGN PDGTVLNALL
HHYPEIVDVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE ALQAREITRE YEAVAIGSMT
AGGMVDQPIA RHSTKRTHMA VHPMGKPAVT HYRIMEHFRA HTRLRLRLET GRTHQIRVHM
AHINHPLVGD QLYGGRPRPP RGASEAFIET LRGFDRQALH ATMLRFYHPI TGIHMEWHAE
LPQDMVDLID ALKADTEEFK DQLDW
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