Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3143 |
Symbol | rluD |
ID | 8134110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3564156 |
End bp | 3565133 |
Gene Length | 978 bp |
Protein Length | 325 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644866438 |
Product | 23S rRNA pseudouridine synthase D |
Protein accession | YP_003018702 |
Protein GI | 253689512 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACAAC AAGTACAACT CACCGCAACG GTGGCCGAAT CTCAACTCGG ACAACGTTTA GATCAGGCTT TGGCCGAATT GTTCCCTGAT TATTCACGAT CCCGTATAAA AGAGTGGATT CTTGAGAATC GGGTACAGAT TAACGGCAAT GTCACCAATA AGCCAAAAGA GAAAGTACTT GGCGGCGAAT CGGTAGCGAT TGATGCATTG ATTGAAGAAG AAGCCCGCTG GGAAGCACAG GATATCAAGC TGGATATCGT GTATGAAGAT CAGGATATTC TGGTCATCAA CAAACCCAGA GATCTGGTGG TTCACCCCGG AGCGGGTAAC CCGGATGGCA CGGTATTGAA TGCCTTGTTG CATCATTATC CTGAGATTGT CGATGTGCCT CGTGCCGGAA TCGTGCACCG GCTTGATAAA GATACGACGG GGCTCATGGT GGTCGCGAAA ACCGTACCAG CACAGACGCG TTTGGTTGAG GCGCTACAGG CGCGCGAAAT TACCCGTGAG TATGAAGCCG TTGCGATTGG CTCGATGACG GCAGGCGGCA TGGTCGATCA ACCTATCGCC CGCCATTCAA CCAAACGTAC TCATATGGCA GTGCACCCAA TGGGTAAGCC TGCTGTAACA CATTATCGCA TCATGGAACA TTTCCGTGCG CATACCCGTT TGCGGTTGCG TCTGGAAACG GGGCGCACCC ATCAGATTCG TGTGCATATG GCACACATTA ATCATCCCCT GGTTGGCGAT CAGCTATACG GCGGTCGTCC TCGTCCACCA AGAGGCGCTT CGGAAGCGTT CATTGAGACG CTGCGTGGTT TCGACCGTCA GGCGCTGCAT GCCACCATGT TGCGTTTCTA CCATCCGATT ACCGGCATTC ACATGGAATG GCATGCGGAA TTGCCGCAGG ATATGGTTGA TCTGATTGAT GCGCTGAAAG CCGATACCGA AGAATTTAAA GATCAGCTCG ACTGGTAA
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Protein sequence | MAQQVQLTAT VAESQLGQRL DQALAELFPD YSRSRIKEWI LENRVQINGN VTNKPKEKVL GGESVAIDAL IEEEARWEAQ DIKLDIVYED QDILVINKPR DLVVHPGAGN PDGTVLNALL HHYPEIVDVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE ALQAREITRE YEAVAIGSMT AGGMVDQPIA RHSTKRTHMA VHPMGKPAVT HYRIMEHFRA HTRLRLRLET GRTHQIRVHM AHINHPLVGD QLYGGRPRPP RGASEAFIET LRGFDRQALH ATMLRFYHPI TGIHMEWHAE LPQDMVDLID ALKADTEEFK DQLDW
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