| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3111 |
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| Symbol | |
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| ID | 8134072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3525093 |
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| End bp | 3527555 |
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| Gene Length | 2463 bp |
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| Protein Length | 820 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644866400 |
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| Product | ATP-dependent RNA helicase HrpB |
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| Protein accession | YP_003018670 |
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| Protein GI | 253689480 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATTTTAC CGCCCGTCAG CGCCGTGCTG GACGATGTCA TAACGGCGCT ACATACCGCG
CCTCAGGTGC TGCTCAATGC CCCTACAGGG GCGGGAAAAT CGACCTGGCT GCCATTGCAA
TTGCTGCAAC AGGGAAAGTT AAATGGGCGC ATCATCATGC TGGAACCGCG TCGTCTGGCG
GCGAAAAGCG TGGCCTGGCG GCTGGCGCAG CAGCTCGGTG AGGAACCGGG ACAGACGATA
GGGTATCGCA TGCGGTCAGA AAGCCGTGTG AGTGACGCAA CGAAGCTGGA AGTCGTCACC
GAAGGGATGC TAACCCGTTT GCTGCAACAG GATGCGGAAC TGCAAGGTGT AGCGCTGATC
ATCCTTGATG AGTTTCATGA GCGCAGTGTG CAGGCCGATT TGGCATTGGC GCTGCTGCTC
GATGTGCAGC AAGGGCTACG CGACGATTTA AAACTGCTGA TTATGTCCGC AACGCTCGAC
AATGCGCGGC TGGCGGCGCT GCTGCCGGAA GCCGTCTGCG TGGTTTCCGA AGGTCGCAGC
TATCCGGTTG AGCGGTGTTA TGTGCCGCTG AATAATCAGG AACGATTGGA AGAGGGCGTT
GCGCGACAGG TGCGACGCTT GCTCAGTGAA GAAGACGGTT CGTTGCTGCT GTTTTTGCCC
GGTGTCGCGG AGATTCGCCG AGTGCAGGCG CTGCTGGAAA ATAGCGTGTC GAGCGAGACG
GATCTCTGTC CGTTATACGG CGCATTGACG CTGGCGGAAC AGCAAAAGGC GATTCTGCCC
GCTGAACCGG GGCGTCGTAA GGTGGTGTTA GCCACCAATA TTGCAGAAAC CAGTCTGACG
ATTGAAGGGA TCCGGCTGGT GGTGGATAGC GGTCTTGAAC GTGTCGCCAG CTTTGATGTG
AAAAGCGGCG TTACCCGACT GGTGACACAG CGAATCAGTC AGGCCTCTAT GGTGCAGCGC
GCCGGACGTG CCGGACGGTT AAGCCCCGGT ATTTGCTGGC ATCTGTGCTC GCGTGAACAG
GCAGAACGCG CAGCGGCGCA AAGCGAAGCT GAGATACTGA ATAGCGATTT AAGTAGCGTC
TGGCTGGACT TATTACAGTG GGGCTGTACC GATGTCGCGC AGTTAACCTG GCTGGATACA
CCACCCGCTC CCGCGCTGTA TGCCGCCCGC AAGCTGCTAC GTCAGCTTGG TATTACCGAT
GAGCAAGATA GGTTGACCGC TGAAGGTCGT AAGATCGCCG CACTAGGCAG TGATGCGCGT
CTGGGGACGA TGTTGTATGC CGCGTCACAG CAAAGTTCAG AAGCGTTGGC CACCGCGGGG
TGTTTGGCGG CGATACTCGA AGAGCCGCCA CGTAGCGGGT CGATTAATCT GGCTGACTGG
TTGCATCGCC CATTATCGCA CTGGTTGCGG CGGGCAAAGC AGCTGACGCG CCGTTTATCG
ACAGTTTCTG GACAAATTGA CGGTGGAGAA GCTGACTGGC TGCTGGCGCA GGCTTTCCCA
GACCGGATTG CCCGGCGGCG CAGTCAGGAT GGGCGCTACC AGCTTGCTAA CGGAAGCGGC
GCGATGATGT CGGCTGATGA GGCGTTATCA GGCACGGAGT GGTTGCTGGC TCCGGCGCTC
TTACAAAACG ATCGATCAGC ACAAAACAAT CAGAACGCAG AGGCACGGAT CCTGCTGGCG
TTGCCGCTGG ATATTGAGCG GCTGGAACGG CGGCTACCTG GATTAATAAA TGAACATAAC
GTGGTGCACT GGGACGAAGA AAAGGGTACT CTGCGCGCCA GCCAGCGTGA CCAGATAGGT
TGCCTGACGC TGAGAACACG CCCGCTGAAC AAGCCTTCCG ATGAAGCACT GCAGCAGGCG
CTGTTATCCT GGATTCGGGA GCAGGGGATT GATGCATTAA ACTGGGACGC CACGGCGTTG
CAGCTACGCG CCCGGCTACA GTGTGCTCAT CAGTGGTTGC CTGAAGTTGA TTGGCCGCGA
GTGGATGATG AAACGCTGCT GGCAACGCTG GAAATCTGGC TACAGCCGTC ACTGTCCGGC
GTGCGTGATT TACGAGCGCT GCACCAGATT AGTTTGAGCG ATGCCCTGCT GCGGCTGTTG
GACTGGCCGC TGCGCCAGCG GCTGGATAGC GCATTGCCCA CGCACTACAC GGCACCCGGA
GGCAGTCGCT TGCCTATTGC CTATTATGAC GATAAACCCC CGGTGCTGTC GGTACGGATG
CAGGAAATGT TCGGCGAGCA GCAGAGCCCG CTGCTGGCGG AAGGTCGTGT GGCGCTGGTG
TTGGAGCTTT TATCGCCAGC ACAGCGTCCA CTACAGATTA CGCGTGATTT AGCCGCATTT
TGGCAAGGCA CGTACCGCGA GGTGCAAAAA GAGATGAAGG GGCGTTACCC CAAGCATGTC
TGGCCGGACG ATCCGGCGAA TACGGCTCCA ACGAGGCGTA CCAAGAAATA TCAGAATCAC
TAA
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| Protein sequence | MILPPVSAVL DDVITALHTA PQVLLNAPTG AGKSTWLPLQ LLQQGKLNGR IIMLEPRRLA
AKSVAWRLAQ QLGEEPGQTI GYRMRSESRV SDATKLEVVT EGMLTRLLQQ DAELQGVALI
ILDEFHERSV QADLALALLL DVQQGLRDDL KLLIMSATLD NARLAALLPE AVCVVSEGRS
YPVERCYVPL NNQERLEEGV ARQVRRLLSE EDGSLLLFLP GVAEIRRVQA LLENSVSSET
DLCPLYGALT LAEQQKAILP AEPGRRKVVL ATNIAETSLT IEGIRLVVDS GLERVASFDV
KSGVTRLVTQ RISQASMVQR AGRAGRLSPG ICWHLCSREQ AERAAAQSEA EILNSDLSSV
WLDLLQWGCT DVAQLTWLDT PPAPALYAAR KLLRQLGITD EQDRLTAEGR KIAALGSDAR
LGTMLYAASQ QSSEALATAG CLAAILEEPP RSGSINLADW LHRPLSHWLR RAKQLTRRLS
TVSGQIDGGE ADWLLAQAFP DRIARRRSQD GRYQLANGSG AMMSADEALS GTEWLLAPAL
LQNDRSAQNN QNAEARILLA LPLDIERLER RLPGLINEHN VVHWDEEKGT LRASQRDQIG
CLTLRTRPLN KPSDEALQQA LLSWIREQGI DALNWDATAL QLRARLQCAH QWLPEVDWPR
VDDETLLATL EIWLQPSLSG VRDLRALHQI SLSDALLRLL DWPLRQRLDS ALPTHYTAPG
GSRLPIAYYD DKPPVLSVRM QEMFGEQQSP LLAEGRVALV LELLSPAQRP LQITRDLAAF
WQGTYREVQK EMKGRYPKHV WPDDPANTAP TRRTKKYQNH
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