| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3080 |
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| Symbol | |
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| ID | 8134035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3487815 |
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| End bp | 3489140 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644866363 |
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| Product | ATP-dependent RNA helicase SrmB |
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| Protein accession | YP_003018639 |
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| Protein GI | 253689449 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.145089 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGTAA CCAATTTTTC CGAGCTCGAT CTTGATGAAA GCCTGTTAGA CGCCCTGCGT
GACATGGGCT ACGAACGCCC GACCGCGATT CAGGCTGAGG CGATCCCTCC AGCAATGGAA
GGCCGCGATG TACTGGGTTC CGCGCCGACA GGGACAGGTA AAACTGCGGC TTATCTGCTG
CCGGTTTTGC AGCATCTCAT CGATTTTCCT CGTAAAAAAT CCGGTCCACC TCGTATTCTG
ATCCTCACAC CAACTCGTGA GCTCGCCATG CAGGTGGCCG ATCAGGCACG TGCGTTTGCG
GCACACACGC ACCTTGATGT CGCCACGATC ACCGGCGGCG TGGCCTACAT GAACCACGCT
GAAGTGTTCA GTGAAAACCA GGATGTCGTC GTCGCGACGA CCGGCCGTTT GCTGCAATAT
ATCAAAGAAG AAAACTTCGA TTGCCGCGCA GTAGAAACGC TGATTCTGGA TGAAGCGGAC
AGAATGCTGG ATATGGGCTT CGCTCAGGAT ATTGAACACA TCGCCGGGGA AACTCGCTGG
CGTAAGCAAA CGCTGCTGTT TTCTGCGACG CTGGAAGGGG ACGCGATCAA AGATTTCGCC
GAGCGTTTGC TCAACGATCC TGTTGAAATC GAATCCGATC CATCACGTCG GGAACGTAAA
AAAATTCTGC AGTGGTATTA CCGCGCCGAC GACGTCAAAC ACAAAACCGC CTTGCTCTGC
CATCAGTTAA AGCAGCCGGA CGTCACGCGT TCTATCATCT TTGTGCGCAA GCGTGAGCGC
GTACATGAGC TGGTTGCCTG GCTGCGTGAA GCGGGCATTA ACTCATGCTA TCTCGAAGGT
GAAATGGTGC AGGCCAAGCG CAATGAGGCG ATCAAACGCC TGAGCGACGG GCGCGTCAAC
GTGCTGGTAG CAACAGATAT CGCAGCGCGC GGTATTGATA TTAACGATGT CAGCCACGTA
TTTAACTTCG ATTTGCCGCG CACATCGGAC ACTTACCTTC ATCGCATCGG CCGCACTGGC
CGCGCGGGTC GTAAAGGCTG TGCCATCTCT TTCGTCGAAG CGCACGATCA CCTGCTGCTG
GGCAAAATCA GCCGCTATCT GAATGAACCG CTAAAACCGC GCGTCATTGA TGAACTCCGC
CCAACGACCA AAGCCCCAAG CGCCAAGACC ACCGGGAAAC CGTCGAAAAA AGTGCTGGCG
ATGCGGAAAG AGAAAAAAGA GAAGGAAAAA GAAAAAGTTA AGGTGAAAGT TCGTCATCGC
GATAGCAAAA ATATCGGTAA GCGTCGTCAA CCCACGCAGA AAACCGACGA ACCGTCTGGC
GAATAA
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| Protein sequence | MTVTNFSELD LDESLLDALR DMGYERPTAI QAEAIPPAME GRDVLGSAPT GTGKTAAYLL
PVLQHLIDFP RKKSGPPRIL ILTPTRELAM QVADQARAFA AHTHLDVATI TGGVAYMNHA
EVFSENQDVV VATTGRLLQY IKEENFDCRA VETLILDEAD RMLDMGFAQD IEHIAGETRW
RKQTLLFSAT LEGDAIKDFA ERLLNDPVEI ESDPSRRERK KILQWYYRAD DVKHKTALLC
HQLKQPDVTR SIIFVRKRER VHELVAWLRE AGINSCYLEG EMVQAKRNEA IKRLSDGRVN
VLVATDIAAR GIDINDVSHV FNFDLPRTSD TYLHRIGRTG RAGRKGCAIS FVEAHDHLLL
GKISRYLNEP LKPRVIDELR PTTKAPSAKT TGKPSKKVLA MRKEKKEKEK EKVKVKVRHR
DSKNIGKRRQ PTQKTDEPSG E
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