Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3078 |
Symbol | |
ID | 8134033 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3485278 |
End bp | 3486879 |
Gene Length | 1602 bp |
Protein Length | 533 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644866361 |
Product | L-aspartate oxidase |
Protein accession | YP_003018637 |
Protein GI | 253689447 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0029] Aspartate oxidase |
TIGRFAM ID | [TIGR00551] L-aspartate oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0341132 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAACGA CCACTGAATA CGTCTGTGAT GTTTTAATCA TTGGCAGCGG TGCTGCCGGG CTTTCACTGG CGCTGCGTCT GGCTTCTCAG GCCAACGTGA CGGTATTAAG CAAAGGCCCA CTCAACGAAG GCGCGACGTT TTATGCTCAG GGCGGCATCG CAGCCGTTTT CGATGAAACT GACACGATTG ATTCCCATAT CGATGATACG CTGATCGCTG GCGATGGCCT GTGTGAACGG GAAGCCGTTG AGTTTATCGC CAGCAATGCC AAACACTGCG TGCAATGGCT TATCGAACAA GGCGTGCTAT TCGATACCGA AACCAGCACC AGCGGTGAAG AACGCTACCA CCTCACGCGC GAAGGCGGAC ACAGCCATCG TCGAATTCTG CACGCGGCGG ATGCGACCGG AAAAGAAGTA GAGAACACGC TGGTGCAGAA AGCGCTATCC CATCCGAATA TTCGGATTAT GGAACGCTGC AACGCCGTCG ATTTAATTAC CTCGAATAAA CTGGGTCTGC CCGGAACACG CCGTATTGTC GGTGCTTATA TATGGAACCG TGAACAGGAA CGCGTCGAAT CCTGCCGGGC AAAAACGGTG GTTCTGGCGA CGGGTGGAGC GTCCAAAGTT TATCAATACA CCACCAATCC CGATATTTCC TCTGGCGATG GCATCGCCAT GGCCTGGCGC GCAGGCTGCC GCGTGGCGAA TCTGGAATTC AATCAGTTCC ATCCAACCTG TCTGTTCCAT CCGCAGGCGC GAAACTTCCT GCTGACGGAA GCGCTGCGCG GTGAAGGGGC GTACCTTAAA CGCCCTGACG GCACGCGCTT TATGCCCGAT TTCGACGCCA GGGGCGAGCT CGCCCCGCGC GATGTGGTCG CCCGCGCGAT TGACCATGAG ATGAAACGAC TCGGTGCAGA CTGCATGTAT CTGGATATCA GCCACAAGCC CGAAGCGTTC ATCAAACAAC ACTTCCCTAC CATTGATGAA AAGCTGCAAT CTCTCGGCAT CGATCTAACG CGTGAAGCAA TACCGATCGT ACCCGCAGCG CACTATACCT GCGGCGGCGT GATGGTCGAC CAGCACGGGC GTACCGACCT TGACGGCCTG TATGCGATTG GCGAAGTCAG CTACACCGGG TTGCACGGTG CAAACCGCAT GGCATCCAAC TCATTACTGG AGTGTCTGGT TTACGGCTGG TCAGCCGCCG AGGATATCTT GCAGCGCTTA CCGCAAATCA AAGCGGTGAA AAAATTACCG GATTGGGATG AAAGCCAAGT CGACAACTCC GACGAACAGG TGGTGATCCA GCATAACTGG CATGAACTGC GTCTGTTTAT GTGGGATTAC GTTGGGATCG TGCGGACGAC GAAGCGGTTG GAGCGGGCAC AGCGCCGCAT CCATCTGCTT CAGCAGGAAA TCAATGAGTA CTATGCCCAC TTCCGTATTT CCAACAATTT GCTGGAACTA CGTAATCTGG TGCAGGTCGC CGAACTCATT GTCCGCTGCG CGCTGGAAAG AAAAGAAAGC CGCGGGCTGC ACTATACTCT GGACTATCCA GAACAGTTCG AAGCGCCGAC GCCAACTATT CTGGTGCCAT AG
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Protein sequence | MQTTTEYVCD VLIIGSGAAG LSLALRLASQ ANVTVLSKGP LNEGATFYAQ GGIAAVFDET DTIDSHIDDT LIAGDGLCER EAVEFIASNA KHCVQWLIEQ GVLFDTETST SGEERYHLTR EGGHSHRRIL HAADATGKEV ENTLVQKALS HPNIRIMERC NAVDLITSNK LGLPGTRRIV GAYIWNREQE RVESCRAKTV VLATGGASKV YQYTTNPDIS SGDGIAMAWR AGCRVANLEF NQFHPTCLFH PQARNFLLTE ALRGEGAYLK RPDGTRFMPD FDARGELAPR DVVARAIDHE MKRLGADCMY LDISHKPEAF IKQHFPTIDE KLQSLGIDLT REAIPIVPAA HYTCGGVMVD QHGRTDLDGL YAIGEVSYTG LHGANRMASN SLLECLVYGW SAAEDILQRL PQIKAVKKLP DWDESQVDNS DEQVVIQHNW HELRLFMWDY VGIVRTTKRL ERAQRRIHLL QQEINEYYAH FRISNNLLEL RNLVQVAELI VRCALERKES RGLHYTLDYP EQFEAPTPTI LVP
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