| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3077 |
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| Symbol | |
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| ID | 8134032 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3484342 |
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| End bp | 3484917 |
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| Gene Length | 576 bp |
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| Protein Length | 191 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644866360 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_003018636 |
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| Protein GI | 253689446 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0022477 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCGAGC AACTGGCAGA TCAGGTTCTG GTCGAGCGAG TCCAAAAAGG CGATCAAAAA
TCGTTTAACT TGTTGGTCGT TCGTTATCAG CATAAGGTAG CGAGCCTGGT ATCGCGGTAT
GTTCCTCAGG GTGACGTGCC GGACGTGGTA CAGGAATCGT TTATTAAAGC CTATCGCGCG
CTAGAGTCAT TTCGCGGCGA TAGTGCGTTC TATACATGGC TGTATCGTAT CGCAGTGAAT
ACGGCCAAGA ATTATCTGGT AGCTCAGGGA CGCCGTCCGC CTTCCAGCGA CATTGATGCG
AATGACGCGG AAAACTATGA AAATGCGGGC GCGCTGAAAG AAATATCGAA CCCTGAGAAT
TTAATGTTGT CAGAGGAATT ACGAAGCATA GTTTTTCGCA CTATCGAGTC TTTGCCGGAA
GATTTACGTT TAGCGATTAC GCTGCGCGAA TTGGACGGTT TAAGCTACGA AGAGATTGCC
GTGATTATGG ATTGTCCCGT CGGCACTGTT CGTTCTCGTA TTTTCCGGGC GCGGGAAGCT
ATTGATAATA AAGTACAACC GCTTATTCAG CGCTAG
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| Protein sequence | MSEQLADQVL VERVQKGDQK SFNLLVVRYQ HKVASLVSRY VPQGDVPDVV QESFIKAYRA
LESFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDIDA NDAENYENAG ALKEISNPEN
LMLSEELRSI VFRTIESLPE DLRLAITLRE LDGLSYEEIA VIMDCPVGTV RSRIFRAREA
IDNKVQPLIQ R
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