| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3064 |
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| Symbol | |
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| ID | 8134019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3471490 |
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| End bp | 3473004 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644866347 |
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| Product | diguanylate cyclase with PAS/PAC and GAF sensors |
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| Protein accession | YP_003018623 |
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| Protein GI | 253689433 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.55248 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTATGAAA TTATAATAAC CCTGCTATTG CTGTTGTTAT TGTTTTCTTC TGTGAAAAAT
AGAAAAATTA AACAAAAGTT TAAAACTGAG CAGAAAAAAC AAGATTTTCT CAACATGACT
TTCTTTGCGA TGGAATATAG TCCTGCTTCA ATTATGATCG CAGATGAAAA TTGTGAAATT
ATTTACGTCA ATCGTCAGTT TATTACCATG TCAGGCTATA TGCCGGATGA GGTTATCGGC
AAAAAAACGA ATATATTAAA TTCAGGTATG ACTAACGCCA GCGTCTATGA AGATCTGTGG
TCTACCATAA ATAAAGGTAA TGTTTGGAGT GGTGAGTTCG TTAACCGGCG TAAAGATGGA
CAGCTGTATT GGGAAAAAGC CAATATCGTT AAAATATATA ATAAAGCGAG TAACACAACC
CAGTATGTTG GCATTAAGTT AGATATCACG GAAAGAAAAT CACAGGAACA TCATGATAAT
TCATACAATC GTGCGCTGGA GCTGTTATCA AGCGGCGCGC CGCTGAAAGA TATTCTTGAT
GCGATCATTT TTAGCGTTGA GGAAAAAAAT CCTGGTCGTA TCGTTTGTTC TGTTTTACTG
GTTGATAAAG ACAAGAAATG TCTGACGCTT GGATCGGCGC CTAGCCTGCC TGGTTTTTAT
AAAAATGCCA TTCACAACGT AAAAATTGCC GATGGTGTAG CCTCTTTTGG TACTGCGGCC
TATACCGGAA AGCGCGTCAT TGCTGACGAT ATTTCGGTCC ATCCGCATTG GTCGTTATAT
AAAGGGCTCG CGTTATATGC CGGGCTGCGT TCCTGTTGGT CTGAACCTAT CATCGGCCAG
AACAAAGAAA TATTAGGTGT TTTAAGCGTT TACCATCGCA AAGTGTATGT ACCGACCGAG
GACGAAATTT TCTCTATTGA GAAATCGGCA CAGCTGATCG CGATCGCCAT AGAGCGGTAT
CATGCTATTG ACATGCTGCG GCGCAGCGAA GAACACTATC GTCAATTGGC GCACTATGAT
TCATTAACGT CGTTGGCTAA TGGTCTGACG TTTGCCGAGC AAATGGAACA GGCGATTTTG
TTATCCAAAC AAACGGGTAG AAAAATCGCA CTGATGTTCC TGGATCTCGA TAAATTTAAA
CAGATAAATG ATTCGTTCGG GCATGCTGTT GGCGATTTGC TCTTGAAAGA AGCGGCGGCG
CGTATGCGCG GTGCGGTTCG CGATTCGGAT ACGGTATATC GCCGCAGCGG TGATGAATTT
ATTATTCTGC TTCAGGGTAT TAAGGAAATT GACAATACGC TTTATGTTGC AGATAAAATC
CATAATGCAT TGAACAAGCC GTTTGAGATC GATGGGAAAA CGCTGGATAT ATCATGCAGT
ATCGGTATTG CGCTGTATCC AGAACACGGA ACTGATTCTC TGACATTAGC AATTAATGCT
GATTCAGCCA TGTATCAGGC TAAAGCCATG GGGCGCAGCC AAACTCAGAT TTATCACAAT
ATGAACGATC ATTGA
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| Protein sequence | MYEIIITLLL LLLLFSSVKN RKIKQKFKTE QKKQDFLNMT FFAMEYSPAS IMIADENCEI
IYVNRQFITM SGYMPDEVIG KKTNILNSGM TNASVYEDLW STINKGNVWS GEFVNRRKDG
QLYWEKANIV KIYNKASNTT QYVGIKLDIT ERKSQEHHDN SYNRALELLS SGAPLKDILD
AIIFSVEEKN PGRIVCSVLL VDKDKKCLTL GSAPSLPGFY KNAIHNVKIA DGVASFGTAA
YTGKRVIADD ISVHPHWSLY KGLALYAGLR SCWSEPIIGQ NKEILGVLSV YHRKVYVPTE
DEIFSIEKSA QLIAIAIERY HAIDMLRRSE EHYRQLAHYD SLTSLANGLT FAEQMEQAIL
LSKQTGRKIA LMFLDLDKFK QINDSFGHAV GDLLLKEAAA RMRGAVRDSD TVYRRSGDEF
IILLQGIKEI DNTLYVADKI HNALNKPFEI DGKTLDISCS IGIALYPEHG TDSLTLAINA
DSAMYQAKAM GRSQTQIYHN MNDH
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