| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3062 |
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| Symbol | |
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| ID | 8134017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3467795 |
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| End bp | 3470098 |
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| Gene Length | 2304 bp |
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| Protein Length | 767 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644866345 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_003018621 |
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| Protein GI | 253689431 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTTGC ATTCAGTACA AGAGACTCAG GGTTCTGATA AATCAGTTAC CCATGAGTCT
ATCGTCCATG AACCGACTGT TGCTCATGAA TCAATGACCG TTAATGAATC AGCGGTTGTT
CATGAGCCAG CTGTCGCTCA TGAAACGGTC ACTAATGAAA CGGTCACTAA TGAAAATAGT
GACCCTCGCA GCCGTCATGA TGACCCGTTA TTGGATGGTT TACTGATCCT CTGTGCCTTG
CAGGGGAAAT CGGTCAGCCG TACCACACTC ACCGCCGGAC TCCCCTTAGC CAACCAGCGA
CTCTCTGTAA AACTGCTTCC GAGAGCCGCT GCACGCGCGG GGCTGCAAGG GCGCGTTCTC
AAACGTTCTC TGAATAAAAT TTCCGATATG TCTCTCCCCG CGATGTTGCT GTTACGGGAA
GGGAGAGCGG CGATTCTGCT AGGCTGGAAC GCTGACGGCA GCGCACGCCT GATGCCCAGT
GAAACAGAAG GCGGGGAAAT TTCCGTTGAG CACAATACGC TGCAACAGAA CTATCTGGGT
CTGGTGATGT TCGCCCAGCC TCGCCATCAG TTCGATCTGC AAAATCCATC GCTGATCCCC
CGCACCAAAT CCTGGTTCAA GGACACACTT AAGCTTTCAC GTTCACTCTA TCTCGATGCC
GTGCTCGCGA CGCTGCTGGT GAACATTATC GCGCTTGCTA CACCGCTGTT TGTGATGAAT
GTCTATGATC GGGTCGTGCC AAATCAGGCA ACGTCAACCT TGTGGGTACT GGCTATTGGT
GTTACCGGTG CTTTTGTTTT CGATTTGATA CTCAAAACAC TGCGCGGCGT TTGCCTCGAT
ATGGCGGGCA AAAAAACCGA TCTGATTATT TCCGCCACGC TATTTGAGCG TATCACCGGT
ATGTCGATGA AGGCCCGGCC ACCGCGGGTC GGTAGTTTCG CGCAGAATAT TCATGAATTT
CAATCGCTCA GAGACTTCCT TTCCTCACTA ACGCTGACGA CGCTGATCGA TTTTCCTTTT
ACATTGCTGC TGCTGTTGGT GATCGGCATC ATCGGCGGCC CGCTGGTCTG GGTTTCCATC
CTGGCCTACC CTATCGCCTT GCTGGCGAGT TGGGCGATGC AAAAGCCGCT GTCCGCCACC
ATTGAAAAAA CGATGCACCT TGCCAGCGAA CGACAGGCAA CGCTGATCGA AACCTTGAGC
TGTCTGGATG CCATCAAGGT CAATAATGCG GAAAGCGAAC GTCAGCACCA ATGGGAACAG
ACCATTGGCA GCCTGAGCAA GCTGGAAATG CGAGCCAAAG TGCTGTCCTC ACTGGCGGTA
AACCTGACGC AGTGGTTCCA GCAATTTGCT GGCGTTGCCA TGATTGTCGT CGGCGTCTAT
ATGCTGATTA ACGGTAAGCT CAGTATGGGT GGGTTGATAG CCTGTTACAT GCTGAACGGC
AGAGCGCTCA TGCCGTTGGG TCAACTGTCT GGCCTGGTCA GTCGTTACCA ACAGGCACGT
TTGACGATGC AAACCACCGA ACAGATGATG CAGTTGCCGC AAGAGCGTAG CGATAACGAA
CGCCCGCTGA AGCGCGAAAG CATCCGGGGC GGTATCGAAT TTCGCGATGT GACGTTCAAT
TACCCGGAAC AAAAAACCAG TTCGCTGCAA AGTATCAGTC TGACCATCGC TCCCGGTGAG
AAAGTGGGCG TTATTGGCCG CAGCGGTTCG GGAAAAAGCT CGCTGCAAAA ACTGATTGTG
AATCTCTATC AGCCTAATAC CGGCAATATT CTGATCGACG GCGTTGACGC TCGCCAGTTG
GATGTCAGCG ATTTACGCCA CAATATCGGC TATGTTCCTC AAGATATTCA GCTATTTAGC
GGTTCACTGC GTAATAACCT GATTAGCGGC GCACGCTATG TCGAAGACGA AGCGATGCTG
CGAGCTGCAG AAATTTCAGG GGTGAACGAG TTTGCTCGTC TGCATCCGGA TGGCTATAAC
CTTCAGGTTG GCGAACGCGG CCAGCAACTC TCCGGCGGAC AACGTCAAGC TGTCGCGATA
GCCAGAGCGT TGTTGCTCGA TCCCCCCATT CTGGTGCTGG ATGAACCCAC CAGTTCGATG
GATAACACCA GTGAAGATCG GTTAAAGCAG GCTCTGGCTC CCATCATTGC AGAGAAAACG
CTTTTGCTGG TTACGCATCG GGTTTCCATG CTGGCGCTTG TCGATCGTTT AGTCATTGTC
GATAAAGGTA AAATTATCGC GGATGGGCCA AAAGCGATTG TGATGGATGC GTTGAAGAAG
GGGCAAATCA ATGCGTCTCG GTAA
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| Protein sequence | MKLHSVQETQ GSDKSVTHES IVHEPTVAHE SMTVNESAVV HEPAVAHETV TNETVTNENS
DPRSRHDDPL LDGLLILCAL QGKSVSRTTL TAGLPLANQR LSVKLLPRAA ARAGLQGRVL
KRSLNKISDM SLPAMLLLRE GRAAILLGWN ADGSARLMPS ETEGGEISVE HNTLQQNYLG
LVMFAQPRHQ FDLQNPSLIP RTKSWFKDTL KLSRSLYLDA VLATLLVNII ALATPLFVMN
VYDRVVPNQA TSTLWVLAIG VTGAFVFDLI LKTLRGVCLD MAGKKTDLII SATLFERITG
MSMKARPPRV GSFAQNIHEF QSLRDFLSSL TLTTLIDFPF TLLLLLVIGI IGGPLVWVSI
LAYPIALLAS WAMQKPLSAT IEKTMHLASE RQATLIETLS CLDAIKVNNA ESERQHQWEQ
TIGSLSKLEM RAKVLSSLAV NLTQWFQQFA GVAMIVVGVY MLINGKLSMG GLIACYMLNG
RALMPLGQLS GLVSRYQQAR LTMQTTEQMM QLPQERSDNE RPLKRESIRG GIEFRDVTFN
YPEQKTSSLQ SISLTIAPGE KVGVIGRSGS GKSSLQKLIV NLYQPNTGNI LIDGVDARQL
DVSDLRHNIG YVPQDIQLFS GSLRNNLISG ARYVEDEAML RAAEISGVNE FARLHPDGYN
LQVGERGQQL SGGQRQAVAI ARALLLDPPI LVLDEPTSSM DNTSEDRLKQ ALAPIIAEKT
LLLVTHRVSM LALVDRLVIV DKGKIIADGP KAIVMDALKK GQINASR
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