| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3058 |
|---|
| Symbol | |
|---|
| ID | 8134013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3449391 |
|---|
| End bp | 3451343 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644866341 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with extracellular sensor |
|---|
| Protein accession | YP_003018617 |
|---|
| Protein GI | 253689427 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCTAT ACAAACAACT ACTGATAGCC ATCTGCCTGT TTGTGCTAAT CATTTTCAGC
GGGAGCTTTT TCGTCAGTCT GGAAAATTCG CGTGAACAGT ACAACAACCA GCTTCACTCT
CACGCTCAGG ATGCCGCCAC CGCGCTTGGG CTTTCCCTGA CGCCGAATAT CGATGACCCG
GCCATGGTCG AACTGATGGT CAGCTCGATT TTCGACAGCG GCTATTTTTC CAGTATTCGC
GTGCGGGATT TAAAAACCGG CAATGTCACG CTGGAGCGTA CCGCATCACC GGATATCCCT
GACGTACCGG GCTGGTTTGT CCGGTTAGTG AACCTGCAAC CCGGCGCGGG CGAAGCCATC
GTGATGCGCG GCTGGGAACA GGCAGCAAAA GTCGAAGTTA TCAGCCACCC GATGTTCGCG
GTGACCCGAC TGTGGCGCAG CAGTACCGCA ACTTTCCTGT GGCTGCTCGG CTGCGGCACG
CTGGGCGTGT TTATTGGCGC GCTGTTCCTG CGCCGCCAGT TACGCCCCCT CGATTATATT
GTCGATCAGT CGCTGGCGAT TACCCGTCGA GAGTTCCTTA GCCAGCCGGA TTTACCTAAT
ACGCCGGAAT TTCGTCGCGT AGCACAGGCG ATGAATCTGA TGGTCAGCAA GCTCAAAACG
CTGTTTGAAG AAGAAGCCGA ACGGAGCGAG CGCTTACGTC AGGATGCCTA TCAGGATCCA
CAAACCGGAT TAAATAACCG GCGTGCGTTT GACATGCAGT TCAACGATAA GCTGGCTGAT
GAAGAAACCG CACCCGGCTT CCTTATTATG CTTCGCGTTC AAGATTTGGC GGGGATGAAT
CAGCGACTGG GCGGCCAGCG TACCGATGCG CTGTTAGCCT CTGTTGGGCA TATTCTGCGT
AAAACACAAA AGCAGCATAC GAATACAGAA AGTCTTCTGG CACGTATTCG CGGGGGAGAA
TTTGCGCTGT TCTGCCCAGG ACTGGTCGAT AAAGAAGCCT ATGCGCTGAT TGGCGAACTG
ACGCGCAATA TCGAAACGTT ACACCTGACG GGCGAAACCG ACGTCTCCCC TGTCGCCCAA
TTCGGTATGG TGCCTTTCCG TCCCGGCGAC ACTGCACAAT CCCTGTTTAT TCAGGGCGAT
CAGGCGCTCA CGCAAGCCGA AAGCAATACC GATACCACCG CCCCTCGCGA GATCCCATCC
GTCAGTGCCG AACAGATCGA AACCGATCGC CATAGATGGT TTAACCTGCT CGACCCGATC
CTTGAACAGG AACGCTTACA GCTTTTCCTG CAACCCGTCG TCGCGTGTGA CGATCCCAGT
CAGGTACTGC ATCACAAGGT ACTGGCTCGC ATTCAGGATG AGCAAGGAAA CAGTATCGCC
GCGGGCCGTT TCCTGCCGTG GATCCAACGC TTTGGCTGGG ATACGCGTCT GGACCAGACG
ATGCTGCGCG AAGTGTTGGA TTATTTGCGC CAGCACGACG GCAACCTCGC GCTGAGCCTG
TCTGGCGCCA CCGTCCTGAA TCGTCACCTG CTCGCCGATC TGCTTGCCCC GCTAAAACAT
CAGCCGGATG TTGCCAGTCG ACTGATTCTG GAACTGGATG AGAATCAATT GCCAGACAGC
GCCCAACTGG AAGCCTTAAT CAAATTATTG AATGAGCATG GCTGTGCGCT GGGGCTCCAG
CATTTTGGTG GACGCTTTAA TATGATCGGC AACCTGTCCC AATGGGGGCT GGCTTACCTG
AAAGTTGATG GCAGCTACAT CCGTAATATC GATCAGGAAA GCGATAAGCA AATGTTTATC
GAAGCACTGT ATCGTGCCAC CAATAGTATT GCCCTACCGC TTATCGCTGA ACGCGTTGAA
ACCGCAGGTG AGCTGAAAGT GCTACAGGAT ATGGGATTAC AGGGAGCAAT GGGACGGCTA
CTGGGTGAAC CCGCGCCAGC CGCCAGATCC TAA
|
|---|
| Protein sequence | MSLYKQLLIA ICLFVLIIFS GSFFVSLENS REQYNNQLHS HAQDAATALG LSLTPNIDDP
AMVELMVSSI FDSGYFSSIR VRDLKTGNVT LERTASPDIP DVPGWFVRLV NLQPGAGEAI
VMRGWEQAAK VEVISHPMFA VTRLWRSSTA TFLWLLGCGT LGVFIGALFL RRQLRPLDYI
VDQSLAITRR EFLSQPDLPN TPEFRRVAQA MNLMVSKLKT LFEEEAERSE RLRQDAYQDP
QTGLNNRRAF DMQFNDKLAD EETAPGFLIM LRVQDLAGMN QRLGGQRTDA LLASVGHILR
KTQKQHTNTE SLLARIRGGE FALFCPGLVD KEAYALIGEL TRNIETLHLT GETDVSPVAQ
FGMVPFRPGD TAQSLFIQGD QALTQAESNT DTTAPREIPS VSAEQIETDR HRWFNLLDPI
LEQERLQLFL QPVVACDDPS QVLHHKVLAR IQDEQGNSIA AGRFLPWIQR FGWDTRLDQT
MLREVLDYLR QHDGNLALSL SGATVLNRHL LADLLAPLKH QPDVASRLIL ELDENQLPDS
AQLEALIKLL NEHGCALGLQ HFGGRFNMIG NLSQWGLAYL KVDGSYIRNI DQESDKQMFI
EALYRATNSI ALPLIAERVE TAGELKVLQD MGLQGAMGRL LGEPAPAARS
|
|---|
| |