| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3053 |
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| Symbol | |
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| ID | 8134008 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3444560 |
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| End bp | 3446086 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644866336 |
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| Product | putative transglycosylase |
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| Protein accession | YP_003018612 |
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| Protein GI | 253689422 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCCAC TCTGGGAAAT GACGTATAAA AAAACTGCCG TTACAGACAG ACAGGCCACA
CGGCCGCCGA GAGATAACTA TTTGAAGCCT TTAAAATTAA ATTATTTTTT CATCGGGATT
ATCACGTTAC TGCTGGCGTT AGCGCTATGG CCTAGTATTC CCTGGCGCAG TAGCCAGGAT
GCTCAGCTCA GGCAGATCCT CTCACGCGGT GAGTTGCGTA TCAGTACGGT CAATTCACCG
CTGACTTATG CAATGAGCAA CGGATCCCCG ACAGGTCTGG ATTATGAACT GGCAAAACGT
TTCGCCGACT ACCTCGGCGT CAAGCTGGTG GTCTCGTCAC GTAAGAACCT TGACGAACTG
TTTGACGATC TGGACGGTGA CGATGCCGAT CTGCTGGCCG CAGGGCTGAT TTACAACCAT
GAGCGTCTGG AACGTTTCCG TGCTGGCCCA ACCTACTATT CCATTTCACA ACAGATGGTC
TACCGCCTCG GTTCGCCTCG TCCAAAAACG CTGGATAAGC TGCAAGGCCG ACTCGTCGTT
ACATCCGGTT CAGCGCACGC GGCGACCCTG CGCGATCTCA AGGCAGAGAA ATACCCGCAG
CTCAACTGGG AATCGGCCTC CGACCAGAGC ACGCAAGAAT TACTCAAGCA GGTTGCTGAC
GGCAAGCTGG ACTACACGCT GGGGGATTCC GTCACCATTG GCTTGATGCA GCGAATTCAT
CCGCAGCTCG CCGTCGCCTT CGATCTCAGT GACGAAGAGC CCGTCACCTG GTATATGCGC
CGTTCGCACG ATGACAGCCT ATCTGCCGCG CTGCTGGACT TCTTCAGCCA GATTGTCGAA
GACGGCACGC TCGCGCGTCT GGAGGAGAAA TATCTCGGCC ACGTTGGTGA GTTTGACTAT
GTCGATACCA CCACATTCCT GAGTGCGATT GATGAAACGT TGCCGGATTT ACGCCCTCTA
TTTGAAAAAT ACGCCACCGA GATCGACTGG AAGCTGCTGG CCGCCATCTC CTATCAGGAG
TCACACTGGA ACCCACAGGC GACATCACCG ACCGGCGTGC GTGGGCTGAT GATGCTCACA
CGCAACACCG CAGAAAGCCT GAACGTGACC GATCGCGTCG ACCCGGAACA AAGCATTCGC
GGCGGCGCGC AGTACATGTC GCATATGATG CAGAAAATGC CGGACACCAT CCCGGAAGAT
GAAAAAATCT GGTTTGCGCT GGCGTCCTAC AACATGGGGT ACGCCCATCT GCTTGACGCG
CGTAAATTGA CTGAAAAACA GAAGGGTAAC CCCGATAGTT GGGTTGATGT GAAGATGCGT
CTGCCGATGT TGAGCCAAAA GCGCTACTAC ACGCAAACCA CCTACGGCTA TGCACGCGGA
CATGAAGCCT ATAACTACGT GGAAAACATT CGACGTTATA TGGTGAGTCT GGAAGGTTAC
CTGATAGAGA AAGAAACGAA AGCGCAACAA CAGACTCAGA TAGCACAAGG CTACCCGGTC
GTTCCTCTCA ACAAGGTGCC GGAATAA
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| Protein sequence | MPPLWEMTYK KTAVTDRQAT RPPRDNYLKP LKLNYFFIGI ITLLLALALW PSIPWRSSQD
AQLRQILSRG ELRISTVNSP LTYAMSNGSP TGLDYELAKR FADYLGVKLV VSSRKNLDEL
FDDLDGDDAD LLAAGLIYNH ERLERFRAGP TYYSISQQMV YRLGSPRPKT LDKLQGRLVV
TSGSAHAATL RDLKAEKYPQ LNWESASDQS TQELLKQVAD GKLDYTLGDS VTIGLMQRIH
PQLAVAFDLS DEEPVTWYMR RSHDDSLSAA LLDFFSQIVE DGTLARLEEK YLGHVGEFDY
VDTTTFLSAI DETLPDLRPL FEKYATEIDW KLLAAISYQE SHWNPQATSP TGVRGLMMLT
RNTAESLNVT DRVDPEQSIR GGAQYMSHMM QKMPDTIPED EKIWFALASY NMGYAHLLDA
RKLTEKQKGN PDSWVDVKMR LPMLSQKRYY TQTTYGYARG HEAYNYVENI RRYMVSLEGY
LIEKETKAQQ QTQIAQGYPV VPLNKVPE
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