Gene PC1_3047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3047 
Symbol 
ID8134002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp3434458 
End bp3435564 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content53% 
IMG OID644866330 
ProductPectinesterase 
Protein accessionYP_003018606 
Protein GI253689416 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4677] Pectin methylesterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAAAAG CCTCAAACCT CTGCAAAACG CTGACCTTAG CTATGCTAAT TTCCTCACCG 
TGGTCGTTAG CGCAGGCAGC CGACTACAAT GCTCTCGTTT CCACCAATGC AGGGGACGCC 
AACGCCTACA AAACCATTAC AGAAGCCATC GCCAGCGCAC CGGCAGACAG CTCACCGTTT 
GTTATCTATG TGAAAAATGG TGTCTACCAC GAGCGCCTGA CCATTACGCG CCCTAACATT 
CATCTACAGG GCGAAAGCCG TGACGGCACC GTGATCACCG CGACAACCGC AGCCGGCACG 
CTCAAACCCG ATGGCAGTAA ATGGGGAACC TATGGCAGCA ACACGGTGAA GGTCGATGCT 
CCCGATTTCA GCGCCCGTTC TCTGACCATC AGCAATGATT TCGATTACCC GGCCAATCAG 
GCCAAAGCCA ATGACGACCC CACCAAGCTA AAAGACTCGC AGGCCGTTGC GCTACTGGTT 
GATGACAAAG GCGATCGTGT CTGGTTCCAC GATGTTAGCC TGACGGGCTA TCAGGACACG 
CTCTATGTGA AAGGGGGACG CAGTTTCTTC TCCAAATGCC GAATCAGCGG CACCGTTGAT 
TTCATCTTTG GTAATGGTAC CGCGCTGTTT GACAATTGCG ACATTGTCGC GCGTAACCGT 
ACCGACGTGA AAAATCAGCC GATTGGCTAC CTCACCGCCC CCAGCACCAA TATTAAACAA 
AAATATGGTT TGGTCATTAT TAATAGCCGT GTGATTAAAG AGAAAGGCGT TCCCGCGAAA 
AGCTATGGTC TGGGCCGCCC CTGGCATCCA ACGACCACTT TTGACGATGG TCGCTATGCC 
GATCCTAACG CCATCGGTCA GACCGTCTTC CTGAACACCA GTATGGACGA CCACATCTAT 
GGCTGGGACA AAATGTCCGG TAAAGATAAA CAAGGTAATA CAATCTGGTT CCATCCGCAG 
GACTCACGCT TTTTCGAGTA TAAATCCAGC GGTAAAGGCG CAGAGAAAAA CGATCAACGC 
CGTCAGTTAA GCGACGCGGA AGCGGCAGAA TACACCCCAG CCAAAGTGCT GGCAGGCTGG 
GTGCCTACCG CGCCTAAAGG GAAGTAG
 
Protein sequence
MIKASNLCKT LTLAMLISSP WSLAQAADYN ALVSTNAGDA NAYKTITEAI ASAPADSSPF 
VIYVKNGVYH ERLTITRPNI HLQGESRDGT VITATTAAGT LKPDGSKWGT YGSNTVKVDA 
PDFSARSLTI SNDFDYPANQ AKANDDPTKL KDSQAVALLV DDKGDRVWFH DVSLTGYQDT 
LYVKGGRSFF SKCRISGTVD FIFGNGTALF DNCDIVARNR TDVKNQPIGY LTAPSTNIKQ 
KYGLVIINSR VIKEKGVPAK SYGLGRPWHP TTTFDDGRYA DPNAIGQTVF LNTSMDDHIY 
GWDKMSGKDK QGNTIWFHPQ DSRFFEYKSS GKGAEKNDQR RQLSDAEAAE YTPAKVLAGW 
VPTAPKGK