| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3004 |
|---|
| Symbol | |
|---|
| ID | 8133959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3388244 |
|---|
| End bp | 3389710 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644866287 |
|---|
| Product | inosine 5'-monophosphate dehydrogenase |
|---|
| Protein accession | YP_003018563 |
|---|
| Protein GI | 253689373 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0516] IMP dehydrogenase/GMP reductase |
|---|
| TIGRFAM ID | [TIGR01302] inosine-5'-monophosphate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00999222 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTACGTA TCGCTAAAGA AGCACTGACG TTTGACGACG TCCTCCTGGT TCCCGCTCAT
TCTACTGTTC TGCCTAATAC TGCCGATCTG TCCACGCAGT TGACGAAAAA CATTCGCCTC
AATATTCCTA TGCTGTCCGC AGCGATGGAT ACCGTTACCG AATCCGGTCT GGCCATTGCG
CTGGCGCAGG AAGGCGGTCT GGGCTTTATT CACAAAAATA TGTCAATTGA GCGTCAGGCG
GAAGAAGTAA GCCGCGTGAA AAAACACGAA AGTGGCGTTG TGGTTGATCC ACAGACGGTC
ACCCCAGAAA CGACGCTGCG TGAAATGAAA GAGCTGACCG AGCGCAACGG CTTCGCGGGT
TACCCTGTCG TGGCAAAAGA CAACGAATTG GTCGGTATCA TCACCGGTCG TGACGTGCGT
TTTGTGACCG ATTTGGAAAA ACCGGTTAGC GCCTTCATGA CGCCGAAAGA GCGTCTGGTC
ACCGTTAAAG AAGGTGAAGC GCGTGACGTC GTGCTGCAAA AAATGCACGA AAAACGCGTC
GAGAAAGCGC TGGTTGTTGA CGATAAATTC CACCTGATCG GTATGATCAC GGTAAAAGAT
TTCCAGAAAG CAGAACGTAA ACCAAACGCC TGTAAAGATG AACACGGTCG TTTGCGTGTA
GGCGCGGCGG TTGGTGCCGG TGCGGGTAAC GAAGAGCGTG TTGATGCGCT GGTTGCCGCA
GGCGTTGATG TTCTGCTGAT CGATTCCTCA CATGGCCATT CCGAAGGCGT ATTGCAGCGT
ATTCGTGAAA CACGTGCTAA ATACCCGAAC CTCGAAATCA TCGGCGGTAA CGTCGCTACG
GGTGCAGGCG CGAAAGCGCT GGTTGAAGCG GGCGTTAGCG CGGTCAAAGT GGGTATCGGC
CCTGGCTCCA TCTGTACTAC CCGTATCGTG ACGGGCGTAG GCGTACCGCA GATTACGGCG
ATCTCCGATG CGGTTGAAGC GCTGGAAGGC ACGGGCATTC CGGTCATCGC CGACGGCGGT
ATCCGCTTCT CCGGCGACAT CGCTAAAGCC ATCGCAGCAG GCGCGGCCTG TGTCATGGTC
GGTTCCATGC TGGCGGGTAC GGAAGAATCT CCGGGTGAAA TCGAACTGTA TCAGGGGCGT
TCATTCAAAT CTTATCGCGG TATGGGCTCA CTGGGCGCGA TGTCCAAAGG CTCATCAGAC
CGTTACTTCC AGACTGATAA CGCGGCCGAC AAACTGGTGC CGGAAGGTAT CGAAGGTCGT
GTAGCCTACA AAGGCCGCCT GAAAGAGATC GTTCACCAGC AGATGGGCGG CTTGCGCTCC
TGTATGGGGC TGACTGGTTG CGCGACTATC GACGCGCTGC GCACGCAGGC TGAGTTTGTA
CGCATCAGCG GCGCGGGCAT TCAGGAAAGC CACGTTCACG ACGTTACCAT TACTAAAGAG
TCACCAAACT ACCGTATGGG TTCATAA
|
|---|
| Protein sequence | MLRIAKEALT FDDVLLVPAH STVLPNTADL STQLTKNIRL NIPMLSAAMD TVTESGLAIA
LAQEGGLGFI HKNMSIERQA EEVSRVKKHE SGVVVDPQTV TPETTLREMK ELTERNGFAG
YPVVAKDNEL VGIITGRDVR FVTDLEKPVS AFMTPKERLV TVKEGEARDV VLQKMHEKRV
EKALVVDDKF HLIGMITVKD FQKAERKPNA CKDEHGRLRV GAAVGAGAGN EERVDALVAA
GVDVLLIDSS HGHSEGVLQR IRETRAKYPN LEIIGGNVAT GAGAKALVEA GVSAVKVGIG
PGSICTTRIV TGVGVPQITA ISDAVEALEG TGIPVIADGG IRFSGDIAKA IAAGAACVMV
GSMLAGTEES PGEIELYQGR SFKSYRGMGS LGAMSKGSSD RYFQTDNAAD KLVPEGIEGR
VAYKGRLKEI VHQQMGGLRS CMGLTGCATI DALRTQAEFV RISGAGIQES HVHDVTITKE
SPNYRMGS
|
|---|
| |